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Error during final "mvn clean install" routine. #25

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jxfish2 opened this issue Jan 29, 2019 · 7 comments
Open

Error during final "mvn clean install" routine. #25

jxfish2 opened this issue Jan 29, 2019 · 7 comments

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@jxfish2
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jxfish2 commented Jan 29, 2019

I finally got everything setup, and to the "Run" section of your BuildGuide.

But, when I get to this point, the "mvn clean install" routine throws a lot of errors.

I am sending a copy of the errors inline:

[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for oib-request 2.3-SNAPSHOT:
[INFO]
[INFO] oib-request ........................................ SUCCESS [ 0.445 s]
[INFO] oib-profile-schema ................................. FAILURE [ 0.724 s]
[INFO] oib-service-test ................................... SKIPPED
[INFO] oib-request-schema ................................. SKIPPED
[INFO] OIB Core Utility Module ............................ SKIPPED
[INFO] oib-valueset-matcher ............................... SKIPPED
[INFO] oib-request-db ..................................... SKIPPED
[INFO] oib-request-inference-rxnorm ....................... SKIPPED
[INFO] oib-ext-resources .................................. SKIPPED
[INFO] oib-request-service ................................ SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 1.399 s
[INFO] Finished at: 2019-01-29T14:00:13-05:00
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.13.1:generate (xsd-generate) on project oib-profile-schema: Execution xsd-generate of goal org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.13.1:generate failed: A required class was missing while executing org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.13.1:generate: com/sun/xml/bind/api/ErrorListener
[ERROR] -----------------------------------------------------
[ERROR] realm = plugin>org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.13.1
[ERROR] strategy = org.codehaus.plexus.classworlds.strategy.SelfFirstStrategy
[ERROR] urls[0] = file:/root/.m2/repository/org/jvnet/jaxb2/maven2/maven-jaxb2-plugin/0.13.1/maven-jaxb2-plugin-0.13.1.jar
[ERROR] urls[1] = file:/root/.m2/repository/org/jvnet/jaxb2/maven2/maven-jaxb2-plugin-core/0.13.1/maven-jaxb2-plugin-core-0.13.1.jar
[ERROR] urls[2] = file:/root/.m2/repository/org/apache/commons/commons-lang3/3.2.1/commons-lang3-3.2.1.jar
[ERROR] urls[3] = file:/root/.m2/repository/com/sun/org/apache/xml/internal/resolver/20050927/resolver-20050927.jar
[ERROR] urls[4] = file:/root/.m2/repository/org/sonatype/plexus/plexus-build-api/0.0.7/plexus-build-api-0.0.7.jar
[ERROR] urls[5] = file:/root/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar
[ERROR] urls[6] = file:/root/.m2/repository/org/codehaus/plexus/plexus-utils/1.5.15/plexus-utils-1.5.15.jar
[ERROR] urls[7] = file:/root/.m2/repository/org/jvnet/jaxb2/maven2/maven-jaxb22-plugin/0.13.1/maven-jaxb22-plugin-0.13.1.jar
[ERROR] urls[8] = file:/root/.m2/repository/org/glassfish/jaxb/jaxb-runtime/2.2.11/jaxb-runtime-2.2.11.jar
[ERROR] urls[9] = file:/root/.m2/repository/org/glassfish/jaxb/jaxb-xjc/2.2.11/jaxb-xjc-2.2.11.jar
[ERROR] urls[10] = file:/root/.m2/repository/org/apache/maven/plugin-tools/maven-plugin-annotations/3.4/maven-plugin-annotations-3.4.jar
[ERROR] Number of foreign imports: 1
[ERROR] import: Entry[import from realm ClassRealm[maven.api, parent: null]]
[ERROR]
[ERROR] -----------------------------------------------------
[ERROR] : com.sun.xml.bind.api.ErrorListener
[ERROR] -> [Help 1]
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.13.1:generate (xsd-generate) on project oib-profile-schema: Execution xsd-generate of goal org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.13.1:generate failed: A required class was missing while executing org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.13.1:generate: com/sun/xml/bind/api/ErrorListener

realm = plugin>org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.13.1
strategy = org.codehaus.plexus.classworlds.strategy.SelfFirstStrategy
urls[0] = file:/root/.m2/repository/org/jvnet/jaxb2/maven2/maven-jaxb2-plugin/0.13.1/maven-jaxb2-plugin-0.13.1.jar
urls[1] = file:/root/.m2/repository/org/jvnet/jaxb2/maven2/maven-jaxb2-plugin-core/0.13.1/maven-jaxb2-plugin-core-0.13.1.jar
urls[2] = file:/root/.m2/repository/org/apache/commons/commons-lang3/3.2.1/commons-lang3-3.2.1.jar
urls[3] = file:/root/.m2/repository/com/sun/org/apache/xml/internal/resolver/20050927/resolver-20050927.jar
urls[4] = file:/root/.m2/repository/org/sonatype/plexus/plexus-build-api/0.0.7/plexus-build-api-0.0.7.jar
urls[5] = file:/root/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar
urls[6] = file:/root/.m2/repository/org/codehaus/plexus/plexus-utils/1.5.15/plexus-utils-1.5.15.jar
urls[7] = file:/root/.m2/repository/org/jvnet/jaxb2/maven2/maven-jaxb22-plugin/0.13.1/maven-jaxb22-plugin-0.13.1.jar
urls[8] = file:/root/.m2/repository/org/glassfish/jaxb/jaxb-runtime/2.2.11/jaxb-runtime-2.2.11.jar
urls[9] = file:/root/.m2/repository/org/glassfish/jaxb/jaxb-xjc/2.2.11/jaxb-xjc-2.2.11.jar
urls[10] = file:/root/.m2/repository/org/apache/maven/plugin-tools/maven-plugin-annotations/3.4/maven-plugin-annotations-3.4.jar
Number of foreign imports: 1
import: Entry[import from realm ClassRealm[maven.api, parent: null]]

at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)

Caused by: org.apache.maven.plugin.PluginExecutionException: Execution xsd-generate of goal org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.13.1:generate failed: A required class was missing while executing org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.13.1:generate: com/sun/xml/bind/api/ErrorListener

realm = plugin>org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.13.1
strategy = org.codehaus.plexus.classworlds.strategy.SelfFirstStrategy
urls[0] = file:/root/.m2/repository/org/jvnet/jaxb2/maven2/maven-jaxb2-plugin/0.13.1/maven-jaxb2-plugin-0.13.1.jar
urls[1] = file:/root/.m2/repository/org/jvnet/jaxb2/maven2/maven-jaxb2-plugin-core/0.13.1/maven-jaxb2-plugin-core-0.13.1.jar
urls[2] = file:/root/.m2/repository/org/apache/commons/commons-lang3/3.2.1/commons-lang3-3.2.1.jar
urls[3] = file:/root/.m2/repository/com/sun/org/apache/xml/internal/resolver/20050927/resolver-20050927.jar
urls[4] = file:/root/.m2/repository/org/sonatype/plexus/plexus-build-api/0.0.7/plexus-build-api-0.0.7.jar
urls[5] = file:/root/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar
urls[6] = file:/root/.m2/repository/org/codehaus/plexus/plexus-utils/1.5.15/plexus-utils-1.5.15.jar
urls[7] = file:/root/.m2/repository/org/jvnet/jaxb2/maven2/maven-jaxb22-plugin/0.13.1/maven-jaxb22-plugin-0.13.1.jar
urls[8] = file:/root/.m2/repository/org/glassfish/jaxb/jaxb-runtime/2.2.11/jaxb-runtime-2.2.11.jar
urls[9] = file:/root/.m2/repository/org/glassfish/jaxb/jaxb-xjc/2.2.11/jaxb-xjc-2.2.11.jar
urls[10] = file:/root/.m2/repository/org/apache/maven/plugin-tools/maven-plugin-annotations/3.4/maven-plugin-annotations-3.4.jar
Number of foreign imports: 1
import: Entry[import from realm ClassRealm[maven.api, parent: null]]

at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)

Caused by: org.apache.maven.plugin.PluginContainerException: A required class was missing while executing org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.13.1:generate: com/sun/xml/bind/api/ErrorListener

realm = plugin>org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.13.1
strategy = org.codehaus.plexus.classworlds.strategy.SelfFirstStrategy
urls[0] = file:/root/.m2/repository/org/jvnet/jaxb2/maven2/maven-jaxb2-plugin/0.13.1/maven-jaxb2-plugin-0.13.1.jar
urls[1] = file:/root/.m2/repository/org/jvnet/jaxb2/maven2/maven-jaxb2-plugin-core/0.13.1/maven-jaxb2-plugin-core-0.13.1.jar
urls[2] = file:/root/.m2/repository/org/apache/commons/commons-lang3/3.2.1/commons-lang3-3.2.1.jar
urls[3] = file:/root/.m2/repository/com/sun/org/apache/xml/internal/resolver/20050927/resolver-20050927.jar
urls[4] = file:/root/.m2/repository/org/sonatype/plexus/plexus-build-api/0.0.7/plexus-build-api-0.0.7.jar
urls[5] = file:/root/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar
urls[6] = file:/root/.m2/repository/org/codehaus/plexus/plexus-utils/1.5.15/plexus-utils-1.5.15.jar
urls[7] = file:/root/.m2/repository/org/jvnet/jaxb2/maven2/maven-jaxb22-plugin/0.13.1/maven-jaxb22-plugin-0.13.1.jar
urls[8] = file:/root/.m2/repository/org/glassfish/jaxb/jaxb-runtime/2.2.11/jaxb-runtime-2.2.11.jar
urls[9] = file:/root/.m2/repository/org/glassfish/jaxb/jaxb-xjc/2.2.11/jaxb-xjc-2.2.11.jar
urls[10] = file:/root/.m2/repository/org/apache/maven/plugin-tools/maven-plugin-annotations/3.4/maven-plugin-annotations-3.4.jar
Number of foreign imports: 1
import: Entry[import from realm ClassRealm[maven.api, parent: null]]

at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)

[ERROR]
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/PluginContainerException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn -rf :oib-profile-schema

Am I missing something?

Any idea why this failed?

Any specific log files I could look at?
@aniskand
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I would double check that your JAVA_HOME is pointing to a JDK and not a JRE. That missing class is part of the core java APIs, not an included dependency.

@jxfish2
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jxfish2 commented Jan 29, 2019

Ok, still got some errors, but MUCH better this time.

Here are the latest errors:

[INFO] Reactor Summary for oib-request 2.3-SNAPSHOT:
[INFO]
[INFO] oib-request ........................................ SUCCESS [ 0.267 s]
[INFO] oib-profile-schema ................................. SUCCESS [ 6.395 s]
[INFO] oib-service-test ................................... SUCCESS [ 0.765 s]
[INFO] oib-request-schema ................................. SUCCESS [ 2.338 s]
[INFO] OIB Core Utility Module ............................ SUCCESS [ 1.417 s]
[INFO] oib-valueset-matcher ............................... SUCCESS [ 0.237 s]
[INFO] oib-request-db ..................................... SUCCESS [ 1.444 s]
[INFO] oib-request-inference-rxnorm ....................... SUCCESS [ 0.144 s]
[INFO] oib-ext-resources .................................. FAILURE [ 0.024 s]
[INFO] oib-request-service ................................ SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 13.249 s
[INFO] Finished at: 2019-01-29T15:44:15-05:00
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal on project oib-ext-resources: Could not resolve dependencies for project org.openinfobutton:oib-ext-resources:jar:2.3-SNAPSHOT: Could not find artifact org.openinfobutton:rest-impl:jar:1.1-SNAPSHOT -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn -rf :oib-ext-resources

@aniskand
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Sorry, you need to build the "rest-terminology-services" project first. It's on the same folder level as "oib-request". You can use the same mvn command.

@jxfish2
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jxfish2 commented Jan 29, 2019

Output with the "-e -X" options:

[INFO] Reactor Summary for oib-request 2.3-SNAPSHOT:
[INFO]
[INFO] oib-request ........................................ SUCCESS [ 0.312 s]
[INFO] oib-profile-schema ................................. SUCCESS [ 4.368 s]
[INFO] oib-service-test ................................... SUCCESS [ 0.288 s]
[INFO] oib-request-schema ................................. SUCCESS [ 0.815 s]
[INFO] OIB Core Utility Module ............................ SUCCESS [ 0.542 s]
[INFO] oib-valueset-matcher ............................... SUCCESS [ 0.413 s]
[INFO] oib-request-db ..................................... SUCCESS [ 0.586 s]
[INFO] oib-request-inference-rxnorm ....................... SUCCESS [ 0.307 s]
[INFO] oib-ext-resources .................................. FAILURE [ 0.109 s]
[INFO] oib-request-service ................................ SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 7.924 s
[INFO] Finished at: 2019-01-29T15:47:25-05:00
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal on project oib-ext-resources: Could not resolve dependencies for project org.openinfobutton:oib-ext-resources:jar:2.3-SNAPSHOT: Could not find artifact org.openinfobutton:rest-impl:jar:1.1-SNAPSHOT -> [Help 1]
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal on project oib-ext-resources: Could not resolve dependencies for project org.openinfobutton:oib-ext-resources:jar:2.3-SNAPSHOT: Could not find artifact org.openinfobutton:rest-impl:jar:1.1-SNAPSHOT

at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)

Caused by: org.apache.maven.project.DependencyResolutionException: Could not resolve dependencies for project org.openinfobutton:oib-ext-resources:jar:2.3-SNAPSHOT: Could not find artifact org.openinfobutton:rest-impl:jar:1.1-SNAPSHOT

at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)

Caused by: org.eclipse.aether.resolution.DependencyResolutionException: Could not find artifact org.openinfobutton:rest-impl:jar:1.1-SNAPSHOT

at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)

Caused by: org.eclipse.aether.resolution.ArtifactResolutionException: Could not find artifact org.openinfobutton:rest-impl:jar:1.1-SNAPSHOT

at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)

Caused by: org.eclipse.aether.transfer.ArtifactNotFoundException: Could not find artifact org.openinfobutton:rest-impl:jar:1.1-SNAPSHOT

at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)

[ERROR]
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn -rf :oib-ext-resources

Any ideas? :P

@aniskand
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Sorry, you need to build the "rest-terminology-services" project first. It's on the same folder level as "oib-request". You can use the same mvn command.

@jxfish2
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jxfish2 commented Jan 29, 2019

Actually, I was pretty certain that I already did.

But, to be safe, I rebuilt it again.

There are no errors that I can see, when building the rest-terminoloty-services project.

But, I still get the same errors, when building the oib-request project.

After re-running both again,

Here is what I am getting from the oib-request build:

[WARNING] The POM for org.openinfobutton:rest-impl:jar:1.1-SNAPSHOT is missing, no dependency information available
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for oib-request 2.3-SNAPSHOT:
[INFO]
[INFO] oib-request ........................................ SUCCESS [ 0.230 s]
[INFO] oib-profile-schema ................................. SUCCESS [ 3.728 s]
[INFO] oib-service-test ................................... SUCCESS [ 0.097 s]
[INFO] oib-request-schema ................................. SUCCESS [ 0.495 s]
[INFO] OIB Core Utility Module ............................ SUCCESS [ 0.258 s]
[INFO] oib-valueset-matcher ............................... SUCCESS [ 0.250 s]
[INFO] oib-request-db ..................................... SUCCESS [ 0.325 s]
[INFO] oib-request-inference-rxnorm ....................... SUCCESS [ 0.105 s]
[INFO] oib-ext-resources .................................. FAILURE [ 0.033 s]
[INFO] oib-request-service ................................ SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5.712 s
[INFO] Finished at: 2019-01-29T16:20:23-05:00
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal on project oib-ext-resources: Could not resolve dependencies for project org.openinfobutton:oib-ext-resources:jar:2.3-SNAPSHOT: Could not find artifact org.openinfobutton:rest-impl:jar:1.1-SNAPSHOT -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn -rf :oib-ext-resources

@aniskand
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Ok I see the problem, the version number in one of the poms wasn't correct. Do a git pull on the repository and try again.

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@aniskand @jxfish2