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ro.json
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{
"graphs" : [ {
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/RO_0002291",
"meta" : {
"definition" : {
"val" : "x is ubiquitously expressed in y if and only if x is expressed in y, and the majority of cells in y express x",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Revisit this term after coordinating with SO/SOM. The domain of this relation should be a sequence, as an instance of a DNA molecule is only expressed in the cell of which it is a part."
} ]
},
"type" : "PROPERTY",
"lbl" : "ubiquitously expressed in"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002292",
"meta" : {
"definition" : {
"val" : "Inverse of 'expressed in'",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "expresses"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002297",
"meta" : {
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "GOC:mtg_berkeley_2013"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists."
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "results_in_formation_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)"
} ]
},
"type" : "PROPERTY",
"lbl" : "results in formation of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002298",
"meta" : {
"definition" : {
"val" : "The relationship that links an entity with the process that results in the formation and shaping of that entity over time from an immature to a mature state.",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_gocam", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension" ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "results_in_morphogenesis_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "tongue morphogenesis (GO:0043587) results in morphogenesis of tongue (UBERON:0001723)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "an annotation of gene X to cell morphogenesis with results_in_morphogenesis_of CL:0000540 (neuron) means that at the end of the process an input neuron has attained its shape."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "GOC:mtg_berkeley_2013"
} ]
},
"type" : "PROPERTY",
"lbl" : "results in morphogenesis of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002299",
"meta" : {
"definition" : {
"val" : "The relationship that links an entity with a process that results in the progression of the entity over time that is independent of changes in it's shape and results in an end point state of that entity.",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "results_in_maturation_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : " an annotation of gene X to cell maturation with results_in_maturation_of CL:0000057 (fibroblast) means that the fibroblast is mature at the end of the process"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "GOC:mtg_berkeley_2013"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "bone maturation (GO:0070977) results_in_maturation_of bone (UBERON:0001474)"
} ]
},
"type" : "PROPERTY",
"lbl" : "results in maturation of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002293",
"meta" : {
"definition" : {
"val" : "inverse of ubiquiotously expressed in",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "ubiquitously expresses"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002295",
"meta" : {
"definition" : {
"val" : "p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://wiki.geneontology.org/index.php/Ontology_extensions"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint."
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "results_in_developmental_progression_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "results in developmental progression of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002296",
"meta" : {
"definition" : {
"val" : "p 'results in development of' c if and only if p is a developmental process and p results in the state of c changing from its initial state as a primordium or anlage through its mature state and to its final state.",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_gocam", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "results_in_development_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "every flower development (GO:0009908) results in development of some flower (PO:0009046)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.geneontology.org/GO.doc.development.shtml"
} ]
},
"type" : "PROPERTY",
"lbl" : "results in development of"
}, {
"id" : "http://purl.obolibrary.org/obo/PATO_0000001",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000589",
"val" : "quality (PATO)"
} ]
},
"type" : "CLASS",
"lbl" : "quality"
}, {
"id" : "http://purl.obolibrary.org/obo/valid_for_gocam",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "pg"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://purl.obolibrary.org/obo/ro/docs/subsets/"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2020-09-22T11:05:45Z"
} ]
},
"type" : "PROPERTY",
"lbl" : "valid_for_gocam"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002286",
"meta" : {
"definition" : {
"val" : "Inverse of developmentally preceded by",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "developmentally succeeded by"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002287",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue"
} ]
},
"type" : "PROPERTY",
"lbl" : "part of developmental precursor of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002285",
"meta" : {
"definition" : {
"val" : "x developmentally replaces y if and only if there is some developmental process that causes x to move or to cease to exist, and for the site that was occupied by x to become occupied by y, where y either comes into existence in this site or moves to this site from somewhere else",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "replaces"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "This relation is intended for cases such as when we have a bone element replacing its cartilage element precursor. Currently most AOs represent this using 'develops from'. We need to decide whether 'develops from' will be generic and encompass replacement, or whether we need a new name for a generic relation that encompasses replacement and development-via-cell-lineage"
} ]
},
"type" : "PROPERTY",
"lbl" : "developmentally replaces"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000092",
"meta" : {
"definition" : {
"val" : "inverse of has disposition",
"xrefs" : [ ]
},
"comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ],
"subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ]
},
"type" : "PROPERTY",
"lbl" : "disposition of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000091",
"meta" : {
"definition" : {
"val" : "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence",
"xrefs" : [ ]
}
},
"type" : "PROPERTY",
"lbl" : "has disposition"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002026",
"meta" : {
"definition" : {
"val" : "A relationship that holds between two images, A and B, where:\nA depicts X;\nB depicts Y;\nX and Y are both of type T'\nC is a 2 layer image consiting of layers A and B;\nA and B are aligned in C according to a shared co-ordinate framework so that common features of X and Y are co-incident with each other.\nNote: A and B may be 2D or 3D.\nExamples include: the relationship between two channels collected simultaneously from a confocal microscope; the relationship between an image dpeicting X and a painted annotation layer that delineates regions of X; the relationship between the tracing of a neuron on an EM stack and the co-ordinate space of the stack; the relationship between two separately collected images that have been brought into register via some image registration software.",
"xrefs" : [ "GOC:dos" ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-12-07T12:58:06Z"
} ]
},
"type" : "PROPERTY",
"lbl" : "in register with"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002029",
"meta" : {
"definition" : {
"val" : "Then percentage of organisms in a population that die during some specified age range (age-specific mortality rate), minus the percentage that die in during the same age range in a wild-type population.",
"xrefs" : [ "PMID:24138933", "Wikipedia:Infant_mortality" ]
},
"comments" : [ "This could be used to record the increased infant morality rate in some population compared to wild-type. For examples of usage see http://purl.obolibrary.org/obo/FBcv_0000351 and subclasses." ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2018-05-22T16:43:28Z"
} ]
},
"type" : "PROPERTY",
"lbl" : "has increased age-specific mortality rate"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000081",
"meta" : {
"definition" : {
"val" : "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence",
"xrefs" : [ ]
},
"comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this investigator role is a role of this person"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "is role of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "role_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists."
} ]
},
"type" : "PROPERTY",
"lbl" : "role of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000080",
"meta" : {
"definition" : {
"val" : "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence",
"xrefs" : [ ]
},
"comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "quality_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A quality inheres in its bearer at all times for which the quality exists."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "is quality of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this red color is a quality of this apple"
} ]
},
"type" : "PROPERTY",
"lbl" : "quality of"
}, {
"id" : "http://purl.obolibrary.org/obo/GO_0044456",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000412",
"val" : "http://purl.obolibrary.org/obo/go.owl"
} ]
},
"type" : "CLASS",
"lbl" : "synapse part"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000085",
"meta" : {
"definition" : {
"val" : "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "has_function"
} ]
},
"type" : "PROPERTY",
"lbl" : "has function"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002264",
"meta" : {
"definition" : {
"val" : "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_gp2term" ],
"synonyms" : [ {
"pred" : "hasRelatedSynonym",
"val" : "affects",
"xrefs" : [ ]
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway."
} ]
},
"type" : "PROPERTY",
"lbl" : "acts upstream of or within"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002022",
"meta" : {
"comments" : [ "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-09-17T13:52:24Z"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
} ]
},
"type" : "PROPERTY",
"lbl" : "directly regulated by"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002023",
"meta" : {
"definition" : {
"val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.",
"xrefs" : [ "GOC:dos" ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-09-17T13:52:38Z"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
} ]
},
"type" : "PROPERTY",
"lbl" : "directly negatively regulated by"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002024",
"meta" : {
"definition" : {
"val" : "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.",
"xrefs" : [ "GOC:dos" ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-09-17T13:52:47Z"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
} ]
},
"type" : "PROPERTY",
"lbl" : "directly positively regulated by"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002025",
"meta" : {
"definition" : {
"val" : "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.",
"xrefs" : [ "GOC:dos" ]
},
"comments" : [ "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations." ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-09-22T14:14:36Z"
} ]
},
"type" : "PROPERTY",
"lbl" : "has effector activity"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002260",
"meta" : {
"definition" : {
"val" : "c has-biological-role r iff c has-role r and r is a biological role (CHEBI:24432)",
"xrefs" : [ ]
}
},
"type" : "PROPERTY",
"lbl" : "has biological role"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002261",
"meta" : {
"definition" : {
"val" : "c has-application-role r iff c has-role r and r is an application role (CHEBI:33232)",
"xrefs" : [ ]
}
},
"type" : "PROPERTY",
"lbl" : "has application role"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000087",
"meta" : {
"definition" : {
"val" : "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "has_role"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this person has role this investigator role (more colloquially: this person has this role of investigator)"
} ]
},
"type" : "PROPERTY",
"lbl" : "has role"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002020",
"meta" : {
"definition" : {
"val" : "Holds between p and c when p is a transport process or transporter activity and the outcome of this p is to move c from one location to another.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-07-20T17:11:08Z"
} ]
},
"type" : "PROPERTY",
"lbl" : "transports"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002262",
"meta" : {
"definition" : {
"val" : "c has-chemical-role r iff c has-role r and r is a chemical role (CHEBI:51086)",
"xrefs" : [ ]
}
},
"type" : "PROPERTY",
"lbl" : "has chemical role"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000086",
"meta" : {
"definition" : {
"val" : "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this apple has quality this red color"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "has_quality"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist."
} ]
},
"type" : "PROPERTY",
"lbl" : "has quality"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002021",
"meta" : {
"definition" : {
"val" : "A relationship between a process and a barrier, where the process occurs in a region spanning the barrier. For cellular processes the barrier is typically a membrane. Examples include transport across a membrane and membrane depolarization.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-07-20T17:19:37Z"
} ]
},
"type" : "PROPERTY",
"lbl" : "occurs across"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002263",
"meta" : {
"definition" : {
"val" : "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_gp2term" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision."
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of"
} ]
},
"type" : "PROPERTY",
"lbl" : "acts upstream of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002019",
"meta" : {
"definition" : {
"val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-07-19T17:30:36Z"
} ]
},
"type" : "PROPERTY",
"lbl" : "has ligand"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000079",
"meta" : {
"definition" : {
"val" : "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence",
"xrefs" : [ ]
},
"comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this catalysis function is a function of this enzyme"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "function_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "is function of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists."
} ]
},
"type" : "PROPERTY",
"lbl" : "function of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002015",
"meta" : {
"definition" : {
"val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.",
"xrefs" : [ ]
},
"comments" : [ "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-05-24T09:31:17Z"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
} ]
},
"type" : "PROPERTY",
"lbl" : "has positive regulatory component activity"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002257",
"meta" : {
"definition" : {
"val" : "Inverse of developmentally induced by",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "developmentally induces"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002258",
"meta" : {
"definition" : {
"val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p",
"xrefs" : [ ]
},
"comments" : [ "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "false"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000232",
"val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
} ]
},
"type" : "PROPERTY",
"lbl" : "developmentally preceded by"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002016",
"meta" : {
"comments" : [ "A has necessary component activity B if A and B are GO molecular functions (GO_0003674), A has_component B and B is necessary for A. For example, ATPase coupled transporter activity has necessary component ATPase activity; transcript factor activity has necessary component DNA binding activity." ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-05-24T09:36:08Z"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
} ]
},
"type" : "PROPERTY",
"lbl" : "has necessary component activity"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002017",
"meta" : {
"comments" : [ "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-05-24T09:44:33Z"
} ]
},
"type" : "PROPERTY",
"lbl" : "has component activity"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002259",
"type" : "PROPERTY",
"lbl" : "defined by inverse"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002018",
"meta" : {
"definition" : {
"val" : "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-05-24T09:49:21Z"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
} ]
},
"type" : "PROPERTY",
"lbl" : "has component process"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002490",
"meta" : {
"definition" : {
"val" : "x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (α(x) >= α(y) & α(x) <= ω(y)) OR (ω(x) <= ω(y) & ω(x) >= α(y))",
"xrefs" : [ ]
},
"comments" : [ "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
} ]
},
"type" : "PROPERTY",
"lbl" : "existence overlaps"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002495",
"meta" : {
"definition" : {
"val" : "x immediate transformation of y iff x immediately succeeds y temporally at a time boundary t, and all of the matter present in x at t is present in y at t, and all the matter in y at t is present in x at t",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/RO_0002575",
"val" : "http://purl.obolibrary.org/obo/RO_0002494"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
} ]
},
"type" : "PROPERTY",
"lbl" : "immediate transformation of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002011",
"meta" : {
"definition" : {
"val" : "A relationship that holds between a process that regulates a transport process and the entity transported by that process.",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "David Osumi-Sutherland"
} ]
},
"type" : "PROPERTY",
"lbl" : "regulates transport of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002253",
"meta" : {
"definition" : {
"val" : "inverse of connecting branch of",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ]
},
"type" : "PROPERTY",
"lbl" : "has connecting branch"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002496",
"meta" : {
"definition" : {
"val" : "x existence starts during or after y if and only if the time point at which x starts is after or equivalent to the time point at which y starts. Formally: x existence starts during or after y iff α (x) >= α (y).",
"xrefs" : [ ]
},
"comments" : [ "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
} ]
},
"type" : "PROPERTY",
"lbl" : "existence starts during or after"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002254",
"meta" : {
"definition" : {
"val" : "x has developmental contribution from y iff x has some part z such that z develops from y",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
} ]
},
"type" : "PROPERTY",
"lbl" : "has developmental contribution from"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002012",
"meta" : {
"definition" : {
"val" : "A part of relation that applies only between occurents.",
"xrefs" : [ ]
}
},
"type" : "PROPERTY",
"lbl" : "occurent part of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002013",
"meta" : {
"definition" : {
"val" : "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-05-24T09:30:46Z"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
} ]
},
"type" : "PROPERTY",
"lbl" : "has regulatory component activity"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002255",
"meta" : {
"definition" : {
"val" : "inverse of has developmental contribution from",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "developmentally contributes to"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002497",
"meta" : {
"definition" : {
"val" : "x existence ends during or before y if and only if the time point at which x ends is before or equivalent to the time point at which y ends.",
"xrefs" : [ ]
},
"comments" : [ "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
} ]
},
"type" : "PROPERTY",
"lbl" : "existence ends during or before"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002014",
"meta" : {
"definition" : {
"val" : "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.",
"xrefs" : [ ]
},
"comments" : [ "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'." ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-05-24T09:31:01Z"
} ]
},
"type" : "PROPERTY",
"lbl" : "has negative regulatory component activity"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002256",
"meta" : {
"definition" : {
"val" : "t1 induced_by t2 if there is a process of developmental induction (GO:0031128) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor anatomical structure type T to T', where T' develops_from T",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Melissa Haendel"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "David Osumi-Sutherland"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "GO:0001759"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "induced by"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000232",
"val" : "We place this under 'developmentally preceded by'. This placement should be examined in the context of reciprocal inductions[cjm]"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : " Developmental Biology, Gilbert, 8th edition, figure 6.5(F)"
} ]
},
"type" : "PROPERTY",
"lbl" : "developmentally induced by"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002491",
"meta" : {
"definition" : {
"val" : "x exists during y if and only if: 1) the time point at which x begins to exist is after or equal to the time point at which y begins and 2) the time point at which x ceases to exist is before or equal to the point at which y ends. Formally: x existence starts and ends during y iff α(x) >= α(y) & α(x) <= ω(y) & ω(x) <= ω(y) & ω(x) >= α(y)",
"xrefs" : [ ]
},
"comments" : [ "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription." ],
"synonyms" : [ {
"pred" : "hasExactSynonym",
"val" : "exists during",
"xrefs" : [ ]
} ],
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"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
} ]
},