Change Log

v1.1 (2015-08-31)

Closed issues:

Change license to LGPL #46
transition matrix sampler tests #35

Merged pull requests:

LGPLv3 headers #52 (marscher)
[flux/sparse] Fix pathway decomposition #50 (trendelkampschroer)
robust stationary distribution function #49 (franknoe)
[analysis/sparse] Relax toorestrictive tolerance #48 (trendelkampschroer)
[estimation] New unit tests for reversible sampling. #47 (trendelkampschroer)

v1.0.4 (2015-08-04)

Merged pull requests:

Convergence tweaks for reversible MLE and sampler #45 (franknoe)
Add sparse options #43 (franknoe)
[dtraj] making full dtraj api available #42 (franknoe)

v1.0.3 (2015-07-29)

Fixed bugs:

compilation failure windows #32

Closed issues:

doctest largest_connected_submatrix fails on py3.4 #40
imports in __init__.py files #24
write a new readme #22
implement SIGINT/Ctrl-C handler in reversible estimator #16
reversible transition matrix sampling with fixed stationary distribution #11
reversible transition matrix sampling and C-extension #10

Merged pull requests:

New readme for msmtools #41 (trendelkampschroer)
Dtraj api #39 (franknoe)
Fix doctests #38 (marscher)
[tmatrix-sampling] follow up fix for PR #33. #37 (marscher)
effective counts: added options #36 (franknoe)
fix #32 #33 (marscher)
Signint handler #31 (fabian-paul)
bugfix: reversible estimators with fixed pi now correctly return the T matrix, even when not converged #30 (fabian-paul)
minor corrections to reversible sampler #29 (franknoe)
Feature sampling #28 (trendelkampschroer)
[analysis.dense.pcca]: relaxed PCCA assertions #25 (franknoe)
removed trailing whitespaces. #23 (marscher)

v1.0.2 (2015-07-14)

Implemented enhancements:

Consider Python3 compatibility for more impact. #17

Closed issues:

Use eigh for reversible matrix decomposition #6

Merged pull requests:

New dtraj-package and removal of io-package #21 (trendelkampschroer)
Readd effective counts #20 (marscher)
[analysis] Reversibe decomposition #19 (trendelkampschroer)
python3 compatibility #18 (marscher)

v1.0.1 (2015-07-13)

Closed issues:

pyemma.msm.io.read_dtraj behaves unexpectedly when file contains floats #14
rename msm.io to avoid shadowing python package io #12
test_generation fails randomly #9
Use eigh for reversible matrix decomposition #8
tpt pathway decomposition fails when requesting all pathways #7
create conda recipe and pypi package #4
enable travis #3

Merged pull requests:

[generation] Fixed randomly failing generation test. #13 (trendelkampschroer)

v1.0 (2015-07-08)

Closed issues:

better package name #2
remove high level api classes #1

* This Change Log was automatically generated by github_changelog_generator