README.md

Mastodon Deep Lineage - a collection of plugins to analyse lineages of tracked objects in Mastodon

Table of Contents

• Documentation of Mastodon
• Installation Instructions
• Numerical Features added to Mastodon
• Hierarchical Clustering of Lineage Trees
• Dimensionality Reduction
• Imports
• Exports
• Maintainer
• Contributors
• License
• Contribute Code or Provide Feedback
• Contribute Documentation
• Acknowledgements

Documentation of Mastodon

mastodon.readthedocs.io

Installation Instructions

• Add the listed Mastodon update sites in Fiji:
  • Help > Update > Manage update sites
    1. Mastodon
    2. Mastodon-DeepLineage

Maintainer

• Stefan Hahmann

Contributors

• Matthias Arzt

License

• BSD 2-Clause License

Contribute Code or Provide Feedback

• You are welcome to submit Pull Requests to this repository. This repository runs code analyses on every Pull Request using SonarCloud.
• Please read the general advice re contributing to Mastodon and its plugins.

Contribute Documentation

• If you would like to contribute to this documentation, feel free to open a pull request. The documentation is written in Markdown format.

Acknowledgements

• The development of this plugin was supported by the DFG under grant 490966236 and the ANR under grant ANR-21-CE13-0044.