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mrjan1195 opened this issue Jul 29, 2023 · 5 comments
Closed

Basemap installation failure in MacOS - Jupyter Notebook #583

mrjan1195 opened this issue Jul 29, 2023 · 5 comments

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@mrjan1195
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Hi! I cannot install basemap in MacOS (M2 pro). I am getting the folllowing error with pip install basemap :

DEPRECATION: Configuring installation scheme with distutils config files is deprecated and will no longer work in the near future. If you are using a Homebrew or Linuxbrew Python, please see discussion at Homebrew/homebrew-core#76621
Collecting basemap
Using cached basemap-1.3.7.zip (156 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting basemap-data<1.4,>=1.3.2 (from basemap)
Using cached basemap_data-1.3.2-py2.py3-none-any.whl (30.5 MB)
Collecting pyshp<2.4,>=1.2 (from basemap)
Using cached pyshp-2.3.1-py2.py3-none-any.whl (46 kB)
Collecting matplotlib<3.8,>=1.5 (from basemap)
Obtaining dependency information for matplotlib<3.8,>=1.5 from https://files.pythonhosted.org/packages/1d/57/888776de79e1c2e787368ecbe63e3e57dbec984a5c83220e44c15fefe226/matplotlib-3.7.2-cp39-cp39-macosx_10_12_x86_64.whl.metadata
Using cached matplotlib-3.7.2-cp39-cp39-macosx_10_12_x86_64.whl.metadata (5.6 kB)
Collecting pyproj<3.6.0,>=1.9.3 (from basemap)
Using cached pyproj-3.5.0-cp39-cp39-macosx_10_9_x86_64.whl (8.5 MB)
Collecting numpy<1.25,>=1.22 (from basemap)
Obtaining dependency information for numpy<1.25,>=1.22 from https://files.pythonhosted.org/packages/9a/cd/d5b0402b801c8a8b56b04c1e85c6165efab298d2f0ab741c2406516ede3a/numpy-1.24.4-cp39-cp39-macosx_10_9_x86_64.whl.metadata
Using cached numpy-1.24.4-cp39-cp39-macosx_10_9_x86_64.whl.metadata (5.6 kB)
Collecting contourpy>=1.0.1 (from matplotlib<3.8,>=1.5->basemap)
Obtaining dependency information for contourpy>=1.0.1 from https://files.pythonhosted.org/packages/44/b4/2bcb2f8afcb7a4652af0fbfa47d5f01ae599c4b35af6f89c1f33c9c56fa3/contourpy-1.1.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata
Using cached contourpy-1.1.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata (5.7 kB)
Collecting cycler>=0.10 (from matplotlib<3.8,>=1.5->basemap)
Using cached cycler-0.11.0-py3-none-any.whl (6.4 kB)
Collecting fonttools>=4.22.0 (from matplotlib<3.8,>=1.5->basemap)
Obtaining dependency information for fonttools>=4.22.0 from https://files.pythonhosted.org/packages/81/17/a18482c4fa12912913e9f19d9bb6fb1a62f92c377d7043d4bb7b98887da7/fonttools-4.41.1-cp39-cp39-macosx_10_9_x86_64.whl.metadata
Using cached fonttools-4.41.1-cp39-cp39-macosx_10_9_x86_64.whl.metadata (150 kB)
Collecting kiwisolver>=1.0.1 (from matplotlib<3.8,>=1.5->basemap)
Using cached kiwisolver-1.4.4-cp39-cp39-macosx_10_9_x86_64.whl (65 kB)
Requirement already satisfied: packaging>=20.0 in /usr/local/lib/python3.9/site-packages (from matplotlib<3.8,>=1.5->basemap) (23.1)
Collecting pillow>=6.2.0 (from matplotlib<3.8,>=1.5->basemap)
Obtaining dependency information for pillow>=6.2.0 from https://files.pythonhosted.org/packages/ce/e1/861a5508b9fd82b39c05e4d49c0979a9c8ccab07dae39d0ce72bd5f2299d/Pillow-10.0.0-cp39-cp39-macosx_10_10_x86_64.whl.metadata
Using cached Pillow-10.0.0-cp39-cp39-macosx_10_10_x86_64.whl.metadata (9.5 kB)
Collecting pyparsing<3.1,>=2.3.1 (from matplotlib<3.8,>=1.5->basemap)
Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB)
Requirement already satisfied: python-dateutil>=2.7 in /usr/local/lib/python3.9/site-packages (from matplotlib<3.8,>=1.5->basemap) (2.8.2)
Collecting importlib-resources>=3.2.0 (from matplotlib<3.8,>=1.5->basemap)
Obtaining dependency information for importlib-resources>=3.2.0 from https://files.pythonhosted.org/packages/29/d1/bed03eca30aa05aaf6e0873de091f9385c48705c4a607c2dfe3edbe543e8/importlib_resources-6.0.0-py3-none-any.whl.metadata
Using cached importlib_resources-6.0.0-py3-none-any.whl.metadata (4.2 kB)
Requirement already satisfied: certifi in /usr/local/lib/python3.9/site-packages (from pyproj<3.6.0,>=1.9.3->basemap) (2023.7.22)
Requirement already satisfied: zipp>=3.1.0 in /usr/local/lib/python3.9/site-packages (from importlib-resources>=3.2.0->matplotlib<3.8,>=1.5->basemap) (3.16.2)
Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.9/site-packages (from python-dateutil>=2.7->matplotlib<3.8,>=1.5->basemap) (1.16.0)
Using cached matplotlib-3.7.2-cp39-cp39-macosx_10_12_x86_64.whl (7.4 MB)
Using cached numpy-1.24.4-cp39-cp39-macosx_10_9_x86_64.whl (19.8 MB)
Using cached contourpy-1.1.0-cp39-cp39-macosx_10_9_x86_64.whl (243 kB)
Using cached fonttools-4.41.1-cp39-cp39-macosx_10_9_x86_64.whl (2.2 MB)
Using cached importlib_resources-6.0.0-py3-none-any.whl (31 kB)
Using cached Pillow-10.0.0-cp39-cp39-macosx_10_10_x86_64.whl (3.4 MB)
Building wheels for collected packages: basemap
Building wheel for basemap (pyproject.toml) ... error
error: subprocess-exited-with-error

× Building wheel for basemap (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [116 lines of output]
:58: RuntimeWarning: Cannot find GEOS library and/or headers in standard locations ('/Users/joseangelohokson/local', '/Users/joseangelohokson', '/usr/local', '/usr', '/opt/local', '/opt', '/sw'). Please install the corresponding packages using your software management system or set the environment variable GEOS_DIR to point to the location where GEOS is installed (for example, if 'geos_c.h' is in '/usr/local/include' and 'libgeos_c' is in '/usr/local/lib', then you need to set GEOS_DIR to '/usr/local'
/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/dist.py:945: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated.
!!

          ********************************************************************************
          Please replace its usage with implicit namespaces (PEP 420).
  
          See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages for details.
          ********************************************************************************
  
  !!
    ep.load()(self, ep.name, value)
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.macosx-12-x86_64-cpython-39
  creating build/lib.macosx-12-x86_64-cpython-39/mpl_toolkits
  copying src/mpl_toolkits/__init__.py -> build/lib.macosx-12-x86_64-cpython-39/mpl_toolkits
  creating build/lib.macosx-12-x86_64-cpython-39/mpl_toolkits/basemap
  copying src/mpl_toolkits/basemap/cm.py -> build/lib.macosx-12-x86_64-cpython-39/mpl_toolkits/basemap
  copying src/mpl_toolkits/basemap/__init__.py -> build/lib.macosx-12-x86_64-cpython-39/mpl_toolkits/basemap
  copying src/mpl_toolkits/basemap/test.py -> build/lib.macosx-12-x86_64-cpython-39/mpl_toolkits/basemap
  copying src/mpl_toolkits/basemap/diagnostic.py -> build/lib.macosx-12-x86_64-cpython-39/mpl_toolkits/basemap
  copying src/mpl_toolkits/basemap/proj.py -> build/lib.macosx-12-x86_64-cpython-39/mpl_toolkits/basemap
  copying src/mpl_toolkits/basemap/solar.py -> build/lib.macosx-12-x86_64-cpython-39/mpl_toolkits/basemap
  running build_ext
  
  Error compiling Cython file:
  ------------------------------------------------------------
  ...
  __geos_major_version__ = GEOS_VERSION_MAJOR
  #if __geos_version__ != "2.2.3-CAPI-1.1.1":
  #     raise ValueError('version 2.2.3 of the geos library is required')
  
  # intialize GEOS (parameters are notice and error function callbacks).
  initGEOS(notice_h, error_h)
           ^
  ------------------------------------------------------------
  
  src/_geoslib.pyx:136:9: Cannot assign type 'void (char *, char *) except *' to 'GEOSMessageHandler'
  
  Error compiling Cython file:
  ------------------------------------------------------------
  ...
  __geos_major_version__ = GEOS_VERSION_MAJOR
  #if __geos_version__ != "2.2.3-CAPI-1.1.1":
  #     raise ValueError('version 2.2.3 of the geos library is required')
  
  # intialize GEOS (parameters are notice and error function callbacks).
  initGEOS(notice_h, error_h)
                     ^
  ------------------------------------------------------------
  
  src/_geoslib.pyx:136:19: Cannot assign type 'void (char *, char *) except *' to 'GEOSMessageHandler'
  Compiling src/_geoslib.pyx because it changed.
  [1/1] Cythonizing src/_geoslib.pyx
  Traceback (most recent call last):
    File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
      main()
    File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
      json_out['return_val'] = hook(**hook_input['kwargs'])
    File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel
      return _build_backend().build_wheel(wheel_directory, config_settings,
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 416, in build_wheel
      return self._build_with_temp_dir(['bdist_wheel'], '.whl',
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 401, in _build_with_temp_dir
      self.run_setup()
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup
      exec(code, locals())
    File "<string>", line 171, in <module>
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup
      return distutils.core.setup(**attrs)
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup
      return run_commands(dist)
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
      dist.run_commands()
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
      self.run_command(cmd)
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/dist.py", line 1234, in run_command
      super().run_command(command)
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
      cmd_obj.run()
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 346, in run
      self.run_command("build")
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
      self.distribution.run_command(command)
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/dist.py", line 1234, in run_command
      super().run_command(command)
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
      cmd_obj.run()
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build.py", line 131, in run
      self.run_command(cmd_name)
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
      self.distribution.run_command(command)
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/dist.py", line 1234, in run_command
      super().run_command(command)
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
      cmd_obj.run()
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/command/build_ext.py", line 84, in run
      _build_ext.run(self)
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 345, in run
      self.build_extensions()
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 467, in build_extensions
      self._build_extensions_serial()
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 493, in _build_extensions_serial
      self.build_extension(ext)
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/setuptools/command/build_ext.py", line 246, in build_extension
      _build_ext.build_extension(self, ext)
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/Cython/Distutils/build_ext.py", line 122, in build_extension
      new_ext = cythonize(
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1134, in cythonize
      cythonize_one(*args)
    File "/private/var/folders/9q/gtxxxnqs13z7yjcptryz4zt40000gn/T/pip-build-env-n30y9c0j/overlay/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1301, in cythonize_one
      raise CompileError(None, pyx_file)
  Cython.Compiler.Errors.CompileError: src/_geoslib.pyx
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for basemap
Failed to build basemap
ERROR: Could not build wheels for basemap, which is required to install pyproject.toml-based projects
Note: you may need to restart the kernel to use updated packages.
@molinav
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molinav commented Jul 29, 2023

Hi @mrjan1195! I find two issues to solve in your traceback:

  1. The main error is due to a problem of our _geoslib.pyx file with the latest Cython release 3.0.0. The bug is already fixed (see Problem with installation on linux/arm64 conda environment #581) but the basemap version 1.3.8 is still not released from my side. You have two options:
    • To manually install cython < 3.0.0 in advance and install without build isolation:
      python -m pip install basemap --no-build-isolation
    • To install not from PyPI but from the hotfix-1.3.8 branch in this repo:
      python -m pip install git+https://github.com/matplotlib/basemap.git@hotfix-1.3.8#subdirectory=packages/basemap
  2. The former point will not be enough in your case, as your traceback warns that GEOS was not found in the default locations and GEOS_DIR was not defined. Since you are building from the source distribution, you will need to define where your GEOS library is available, so that _geoslib.pyx can be compiled and linked. If your GEOS was installed with Homebrew, probably GEOS_DIR should be something like $(brew --prefix) (not tested, I do not have a MacOS device around).

@mrjan1195
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Hi @molinav! Thank you for your reply.

For 1, I used "python3 -m pip install cython --no-build-isolation", and I got:
Defaulting to user installation because normal site-packages is not writeable
Collecting cython
Obtaining dependency information for cython from https://files.pythonhosted.org/packages/f6/94/8d553dff3baf9cdd4b2481e59c2cfc8247c0c847170dd10574f81718d142/Cython-3.0.0-py2.py3-none-any.whl.metadata
Using cached Cython-3.0.0-py2.py3-none-any.whl.metadata (3.1 kB)
Using cached Cython-3.0.0-py2.py3-none-any.whl (1.2 MB)
Installing collected packages: cython
WARNING: The scripts cygdb, cython and cythonize are installed in '/Users/jahokson/Library/Python/3.9/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Successfully installed cython-3.0.0

For 2, I have found it using "brew --prefix geos". Then I set it using " export GEOS_DIR="/Users/username/homebrew/opt/geos" ".

I am still getting errors when running "pip3 install basemap" .
Defaulting to user instllation because normal site-packages is not writeable
Collecting basemap
Using cached basemap-1.3.7.zip (156 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting basemap-data<1.4,>=1.3.2 (from basemap)
Using cached basemap_data-1.3.2-py2.py3-none-any.whl (30.5 MB)
Collecting pyshp<2.4,>=1.2 (from basemap)
Using cached pyshp-2.3.1-py2.py3-none-any.whl (46 kB)
Collecting matplotlib<3.8,>=1.5 (from basemap)
Obtaining dependency information for matplotlib<3.8,>=1.5 from https://files.pythonhosted.org/packages/a3/e5/c9cdc737ea2256285dc1b28e8ecbf649c716cfc7b1ee12a8be6d4cf1feb7/matplotlib-3.7.2-cp39-cp39-macosx_11_0_arm64.whl.metadata
Using cached matplotlib-3.7.2-cp39-cp39-macosx_11_0_arm64.whl.metadata (5.6 kB)
Collecting pyproj<3.6.0,>=1.9.3 (from basemap)
Using cached pyproj-3.5.0-cp39-cp39-macosx_11_0_arm64.whl (5.7 MB)
Collecting numpy<1.25,>=1.22 (from basemap)
Obtaining dependency information for numpy<1.25,>=1.22 from https://files.pythonhosted.org/packages/14/27/638aaa446f39113a3ed38b37a66243e21b38110d021bfcb940c383e120f2/numpy-1.24.4-cp39-cp39-macosx_11_0_arm64.whl.metadata
Using cached numpy-1.24.4-cp39-cp39-macosx_11_0_arm64.whl.metadata (5.6 kB)
Collecting contourpy>=1.0.1 (from matplotlib<3.8,>=1.5->basemap)
Obtaining dependency information for contourpy>=1.0.1 from https://files.pythonhosted.org/packages/1b/26/192990fa4d10747d59c34d9eac2da0e045ae80aff9ae8a3e8d198146f11f/contourpy-1.1.0-cp39-cp39-macosx_11_0_arm64.whl.metadata
Using cached contourpy-1.1.0-cp39-cp39-macosx_11_0_arm64.whl.metadata (5.7 kB)
Collecting cycler>=0.10 (from matplotlib<3.8,>=1.5->basemap)
Using cached cycler-0.11.0-py3-none-any.whl (6.4 kB)
Collecting fonttools>=4.22.0 (from matplotlib<3.8,>=1.5->basemap)
Obtaining dependency information for fonttools>=4.22.0 from https://files.pythonhosted.org/packages/de/03/8a5a290c541ffcb6c7e56a1f7acf94d07389c4782d79e290449c9f9c03a5/fonttools-4.41.1-cp39-cp39-macosx_10_9_universal2.whl.metadata
Using cached fonttools-4.41.1-cp39-cp39-macosx_10_9_universal2.whl.metadata (150 kB)
Collecting kiwisolver>=1.0.1 (from matplotlib<3.8,>=1.5->basemap)
Using cached kiwisolver-1.4.4-cp39-cp39-macosx_11_0_arm64.whl (63 kB)
Collecting packaging>=20.0 (from matplotlib<3.8,>=1.5->basemap)
Using cached packaging-23.1-py3-none-any.whl (48 kB)
Collecting pillow>=6.2.0 (from matplotlib<3.8,>=1.5->basemap)
Obtaining dependency information for pillow>=6.2.0 from https://files.pythonhosted.org/packages/16/b5/b8e7419e1d746246bca06fd38eb988507b382f3fd2ee5dede2e4154022ad/Pillow-10.0.0-cp39-cp39-macosx_11_0_arm64.whl.metadata
Using cached Pillow-10.0.0-cp39-cp39-macosx_11_0_arm64.whl.metadata (9.5 kB)
Collecting pyparsing<3.1,>=2.3.1 (from matplotlib<3.8,>=1.5->basemap)
Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB)
Collecting python-dateutil>=2.7 (from matplotlib<3.8,>=1.5->basemap)
Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
Collecting importlib-resources>=3.2.0 (from matplotlib<3.8,>=1.5->basemap)
Obtaining dependency information for importlib-resources>=3.2.0 from https://files.pythonhosted.org/packages/29/d1/bed03eca30aa05aaf6e0873de091f9385c48705c4a607c2dfe3edbe543e8/importlib_resources-6.0.0-py3-none-any.whl.metadata
Using cached importlib_resources-6.0.0-py3-none-any.whl.metadata (4.2 kB)
Collecting certifi (from pyproj<3.6.0,>=1.9.3->basemap)
Obtaining dependency information for certifi from https://files.pythonhosted.org/packages/4c/dd/2234eab22353ffc7d94e8d13177aaa050113286e93e7b40eae01fbf7c3d9/certifi-2023.7.22-py3-none-any.whl.metadata
Using cached certifi-2023.7.22-py3-none-any.whl.metadata (2.2 kB)
Collecting zipp>=3.1.0 (from importlib-resources>=3.2.0->matplotlib<3.8,>=1.5->basemap)
Obtaining dependency information for zipp>=3.1.0 from https://files.pythonhosted.org/packages/8c/08/d3006317aefe25ea79d3b76c9650afabaf6d63d1c8443b236e7405447503/zipp-3.16.2-py3-none-any.whl.metadata
Using cached zipp-3.16.2-py3-none-any.whl.metadata (3.7 kB)
Requirement already satisfied: six>=1.5 in /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/site-packages (from python-dateutil>=2.7->matplotlib<3.8,>=1.5->basemap) (1.15.0)
Using cached matplotlib-3.7.2-cp39-cp39-macosx_11_0_arm64.whl (7.3 MB)
Using cached numpy-1.24.4-cp39-cp39-macosx_11_0_arm64.whl (13.9 MB)
Using cached contourpy-1.1.0-cp39-cp39-macosx_11_0_arm64.whl (229 kB)
Using cached fonttools-4.41.1-cp39-cp39-macosx_10_9_universal2.whl (2.7 MB)
Using cached importlib_resources-6.0.0-py3-none-any.whl (31 kB)
Using cached Pillow-10.0.0-cp39-cp39-macosx_11_0_arm64.whl (3.1 MB)
Using cached certifi-2023.7.22-py3-none-any.whl (158 kB)
Using cached zipp-3.16.2-py3-none-any.whl (7.2 kB)
Building wheels for collected packages: basemap
Building wheel for basemap (pyproject.toml) ... error
error: subprocess-exited-with-error

× Building wheel for basemap (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [115 lines of output]
/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/dist.py:945: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated.
!!

          ********************************************************************************
          Please replace its usage with implicit namespaces (PEP 420).
  
          See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages for details.
          ********************************************************************************
  
  !!
    ep.load()(self, ep.name, value)
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.macosx-10.9-universal2-cpython-39
  creating build/lib.macosx-10.9-universal2-cpython-39/mpl_toolkits
  copying src/mpl_toolkits/__init__.py -> build/lib.macosx-10.9-universal2-cpython-39/mpl_toolkits
  creating build/lib.macosx-10.9-universal2-cpython-39/mpl_toolkits/basemap
  copying src/mpl_toolkits/basemap/cm.py -> build/lib.macosx-10.9-universal2-cpython-39/mpl_toolkits/basemap
  copying src/mpl_toolkits/basemap/__init__.py -> build/lib.macosx-10.9-universal2-cpython-39/mpl_toolkits/basemap
  copying src/mpl_toolkits/basemap/test.py -> build/lib.macosx-10.9-universal2-cpython-39/mpl_toolkits/basemap
  copying src/mpl_toolkits/basemap/diagnostic.py -> build/lib.macosx-10.9-universal2-cpython-39/mpl_toolkits/basemap
  copying src/mpl_toolkits/basemap/proj.py -> build/lib.macosx-10.9-universal2-cpython-39/mpl_toolkits/basemap
  copying src/mpl_toolkits/basemap/solar.py -> build/lib.macosx-10.9-universal2-cpython-39/mpl_toolkits/basemap
  running build_ext
  
  Error compiling Cython file:
  ------------------------------------------------------------
  ...
  __geos_major_version__ = GEOS_VERSION_MAJOR
  #if __geos_version__ != "2.2.3-CAPI-1.1.1":
  #     raise ValueError('version 2.2.3 of the geos library is required')
  
  # intialize GEOS (parameters are notice and error function callbacks).
  initGEOS(notice_h, error_h)
           ^
  ------------------------------------------------------------
  
  src/_geoslib.pyx:136:9: Cannot assign type 'void (char *, char *) except *' to 'GEOSMessageHandler'
  
  Error compiling Cython file:
  ------------------------------------------------------------
  ...
  __geos_major_version__ = GEOS_VERSION_MAJOR
  #if __geos_version__ != "2.2.3-CAPI-1.1.1":
  #     raise ValueError('version 2.2.3 of the geos library is required')
  
  # intialize GEOS (parameters are notice and error function callbacks).
  initGEOS(notice_h, error_h)
                     ^
  ------------------------------------------------------------
  
  src/_geoslib.pyx:136:19: Cannot assign type 'void (char *, char *) except *' to 'GEOSMessageHandler'
  Compiling src/_geoslib.pyx because it changed.
  [1/1] Cythonizing src/_geoslib.pyx
  Traceback (most recent call last):
    File "/Users/jahokson/Library/Python/3.9/lib/python/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
      main()
    File "/Users/jahokson/Library/Python/3.9/lib/python/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
      json_out['return_val'] = hook(**hook_input['kwargs'])
    File "/Users/jahokson/Library/Python/3.9/lib/python/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel
      return _build_backend().build_wheel(wheel_directory, config_settings,
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 416, in build_wheel
      return self._build_with_temp_dir(['bdist_wheel'], '.whl',
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 401, in _build_with_temp_dir
      self.run_setup()
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup
      exec(code, locals())
    File "<string>", line 171, in <module>
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup
      return distutils.core.setup(**attrs)
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup
      return run_commands(dist)
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
      dist.run_commands()
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
      self.run_command(cmd)
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/dist.py", line 1234, in run_command
      super().run_command(command)
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
      cmd_obj.run()
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 346, in run
      self.run_command("build")
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
      self.distribution.run_command(command)
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/dist.py", line 1234, in run_command
      super().run_command(command)
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
      cmd_obj.run()
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build.py", line 131, in run
      self.run_command(cmd_name)
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
      self.distribution.run_command(command)
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/dist.py", line 1234, in run_command
      super().run_command(command)
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
      cmd_obj.run()
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/command/build_ext.py", line 84, in run
      _build_ext.run(self)
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 345, in run
      self.build_extensions()
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 467, in build_extensions
      self._build_extensions_serial()
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 493, in _build_extensions_serial
      self.build_extension(ext)
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/setuptools/command/build_ext.py", line 246, in build_extension
      _build_ext.build_extension(self, ext)
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/Cython/Distutils/build_ext.py", line 122, in build_extension
      new_ext = cythonize(
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1134, in cythonize
      cythonize_one(*args)
    File "/private/var/folders/k2/80sk2b7n4_dcyckzqvy9kmxw0000gn/T/pip-build-env-lnuihrn6/overlay/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1301, in cythonize_one
      raise CompileError(None, pyx_file)
  Cython.Compiler.Errors.CompileError: src/_geoslib.pyx
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for basemap

@molinav
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molinav commented Jul 30, 2023

Hi @mrjan1195! You still get the compiling issue because it installed Cython 3.0.0, which is our source of the problem. You need to specify the Cython version when installing it:

python3 -m pip install "cython < 3"

After that, you can install the current basemap version (1.3.7) successfully if doing it without build isolation (so that it uses the Cython that you have just installed):

python3 -m pip install --no-build-isolation basemap

Since you now have no warnings about GEOS_DIR, it seems that you solved this issue with the brew call. Let's see if now everything works!

@mrjan1195
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Hi @molinav! Now, it is working. Thank you so much for your help. Cheers!

@molinav
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molinav commented Jul 30, 2023

Nice to hear! I am closing the issue then. If you have any other problems in the future, feel free to open an issue.

@molinav molinav closed this as completed Jul 30, 2023
@molinav molinav mentioned this issue Aug 3, 2023
Closed
@ma595 ma595 mentioned this issue Jun 25, 2024
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@molinav @mrjan1195