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Editing residue list #11

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maxscheurer opened this issue Jan 6, 2017 · 2 comments
Open

Editing residue list #11

maxscheurer opened this issue Jan 6, 2017 · 2 comments
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@maxscheurer
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maxscheurer commented Jan 6, 2017

Currently, we are reading atom types/names from a CHARMM parameter file,
probably we can make a default list in the GUI and let the user add or change new atom types/names
or even better: make a recognition scheme for types of atoms, as not all the users will have CHARMM topologies... While I'm writing this, I am thinking that the atom types stuff in the hbond recognition is really stupid and we should think of a better solution... Sorry, I will self-assign me to this task.

Furthermore, there must be a feature to add custom residues and their properties.

@maxscheurer maxscheurer self-assigned this Jan 6, 2017
@maxscheurer maxscheurer added this to the Beta version milestone Jan 6, 2017
@maxscheurer
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maxscheurer commented Mar 10, 2017

Probably, one can "deduce" the type of heteroatoms concerning their hydrogen bond properties...
e.g.:

  • OH* -> both
  • O[^H] -> donor
  • same for N

@maxscheurer
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As already mentioned: there must be a feature to add custom residues and their properties.

@maxscheurer maxscheurer assigned ghost Apr 12, 2017
@maxscheurer maxscheurer changed the title Editing hbond atoms and residue list Editing residue list Apr 20, 2017
@maxscheurer maxscheurer unassigned ghost Apr 20, 2017
@maxscheurer maxscheurer removed this from the Ready for Release milestone May 29, 2017
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