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Installation on Windows 7 #3

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ejmurray opened this issue Oct 5, 2016 · 6 comments
Closed

Installation on Windows 7 #3

ejmurray opened this issue Oct 5, 2016 · 6 comments
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@ejmurray
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ejmurray commented Oct 5, 2016

DAWG doesn't seem to install and there is a problem with lxml.

@mcs07
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mcs07 commented Oct 5, 2016

These components use C++ behind the scenes for improved performance, so require a compiler. I managed to get them to install with pip on Windows 10 by installing the Visual C++ build tools from here: http://landinghub.visualstudio.com/visual-cpp-build-tools

But this isn't really an ideal situation. I think a better solution for Windows support is to use Anaconda, because it uses binary packages for each platform. I will need to put together a ChemDataExtractor conda recipe, but then conda install ChemDataExtractor should work without a compiler.

@ejmurray
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ejmurray commented Oct 5, 2016

Slight problem in that it is looking for it in a win-64 directory when trying to install via Anaconda.

Fetching package metadata .................Error: Could not find URL: https://gi
thub.com/mcs07/ChemDataExtractor/win-64/

@ejmurray ejmurray closed this as completed Oct 5, 2016
@ejmurray
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ejmurray commented Oct 5, 2016

The .condarc file points to:

https://github.com/mcs07/ChemDataExtractor

@mcs07
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mcs07 commented Oct 5, 2016

Yeah sorry, I haven't made the conda recipe yet. I'll post here when it's done.

@ejmurray
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ejmurray commented Oct 5, 2016

Thanks again. I'm looking forward to testing it on some metabolism/metabolomics papers hence the constant barrage of questions (testing/getting it up an running).

@mcs07
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mcs07 commented Oct 13, 2016

Windows packages are now available on the chemdataextractor conda channel. There should be no need to add anything to your .condarc file, just run conda install -c chemdataextractor chemdataextractor

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