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Allow MedTagger to upload Scans with sequences from a single DICOM file #412

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jpowie01 opened this issue Aug 18, 2018 · 0 comments
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Backend 🏭 Stuff related to Backend part. Enhancement 🌪 Things that improve our project. Frontend 🖥 Stuff related to Frontend part. P1 Things with #1 Priority

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@jpowie01
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Current Behavior

MedTagger allow to upload only 3D Scans which are made of multiple 2D DICOM files.

Expected Behavior

We should allow Administrators/Doctors to upload "movies" or sequences that are stored in a single DICOM file.

Additional comment

Here is an example of such DICOM file (ask @jpowie01 for example file):

>>> import SimpleITK as sitk
>>> import matplotlib.pyplot as plt
>>> image = sitk.ReadImage('sequence.dcm')
>>> array = sitk.GetArrayFromImage(image)
>>> array.shape
(29, 512, 512)
>>> plt.imshow(array[10], cmap='gray')
# Example Image will show

Classic 3D Scans contain such example DICOM files:

>>> import SimpleITK as sitk
>>> import matplotlib.pyplot as plt
>>> image = sitk.ReadImage('single.dcm')
>>> array = sitk.GetArrayFromImage(image)
>>> array.shape
(1, 1024, 1024)
>>> plt.imshow(array[0], cmap='gray')
# Example Image will show
@jpowie01 jpowie01 added Enhancement 🌪 Things that improve our project. Frontend 🖥 Stuff related to Frontend part. Backend 🏭 Stuff related to Backend part. P1 Things with #1 Priority Backlog 🌍 labels Aug 18, 2018
@kolszewska kolszewska added this to the Sprint #4 milestone Aug 21, 2018
@kolszewska kolszewska modified the milestones: Sprint #4, Sprint #5 Sep 4, 2018
@jszemplinski jszemplinski self-assigned this Sep 13, 2018
@kolszewska kolszewska modified the milestones: Sprint #5, Sprint #6 Sep 17, 2018
@kolszewska kolszewska modified the milestones: Sprint #6, Sprint #7 Oct 8, 2018
@kolszewska kolszewska removed this from the Sprint #7 milestone Jan 15, 2019
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Labels
Backend 🏭 Stuff related to Backend part. Enhancement 🌪 Things that improve our project. Frontend 🖥 Stuff related to Frontend part. P1 Things with #1 Priority
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