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I'm running into an error trying to produce the quality plots with iu-filter-quality-minoche. This is the command I ran and the error I received:
#!/bin/bash
source activate anvio-7
iu-gen-configs samples_ada.txt -o 01_QC_minoche/
for ini in 01_QC_minoche/*.ini;
do iu-filter-quality-minoche $ini --visualize-quality-curves;
done
Quality scores visualization in progress: FAILED_REASON_N Traceback (most recent call last):
File "/home/saatkinson/anaconda3/envs/anvio-7/bin/iu-filter-quality-minoche", line 314, in <module>
sys.exit(main(config, args))
File "/home/saatkinson/anaconda3/envs/anvio-7/bin/iu-filter-quality-minoche", line 265, in main
title = 'Mean PHRED scores for pairs tagged as "%s"' % entry_type)
File "/home/saatkinson/anaconda3/envs/anvio-7/lib/python3.6/site-packages/IlluminaUtils/utils/helperfunctions.py", l
ine 558, in visualize_qual_stats_dict
subplots[tile] = plt.subplot(next(gs))
TypeError: 'Gs' object is not an iterator
All the other files associated with Minoche seem to have been generated, just not the plots.
Any help getting the quality plots to generate would be most appreciated!
Thanks,
Samantha
The text was updated successfully, but these errors were encountered:
Thanks for the report. I fixed the error (at least I think I did). Now I will make a new release and then will ask you to update illumina-utils installation.
Hi,
I'm running into an error trying to produce the quality plots with iu-filter-quality-minoche. This is the command I ran and the error I received:
All the other files associated with Minoche seem to have been generated, just not the plots.
Any help getting the quality plots to generate would be most appreciated!
Thanks,
Samantha
The text was updated successfully, but these errors were encountered: