Functions and utilities to compile and harmonize public GEO DNA methylation array datasets. This includes
generation of the assay compilation objects as HDF5 and HDF5-SummarizedExperiment objects, as well as
metadata mappings and predictions for sample metadata from study SOFT files. To see implementation, see the
recountmethylation_instance resource.
Install this package from an R session using the devtools R package with:
devtools::install_github("metamaden/rmpipeline")
Obtain this package from github with:
git clone https://www.github.com/metamaden/recountmethylation.pipeline
Install the cloned repo using:
R CMD INSTALL recountmethylation.pipeline
After installation, load this package into an active R session library(recountmethylation.pipeline).