-
Notifications
You must be signed in to change notification settings - Fork 0
/
ftp.ncbi.nih.gov.refseq_deletes
executable file
·46 lines (42 loc) · 1.35 KB
/
ftp.ncbi.nih.gov.refseq_deletes
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
#!/bin/sh
## Do we still need this package?
##
comment="RefSeq Cumulative delete file"
# This will be used in the naming the log file
#
# set path of files on remote server
REMOTE_SITE=ftp.ncbi.nih.gov
#url to remote site
REMOTE_SITE_URL=ftp://$REMOTE_SITE
REMOTE_DIR=/refseq/special_requests
# Remote directory path does not exist anymore
LOCAL_DIR=$REMOTE_SITE/refseq/refseq_deletes
## List of files to download
#
REMOTE_FILES="suppressed_*"
# Note: Remote file expression changed from suppressed.* to suppressed_*
#
#wget options
#
# Log in as anonymous and give email as password
WGET_OPTIONS="--no-parent -S -t 10 -nd -m"
#
# wget
# -S = print the headers sent by HTTP servers and responses sent by FTP servers.
# -o = full path to log file
# -O = full path to output file
# -t = number of retries
# -r = reverse
# -k 7 = sort by the 7th column
# -nd = don't create directories
# -m = Turn on options suitable for mirroring. This option turns on recursion
# and time-stamping, sets infinite recursion depth and keeps FTP
# directory listings. It is currently equivalent to .-r -N -l
# inf --no-remove-listing..
#******** Optional *************
# Do not download any files if local directories do not exist
local_dir_check=true
# Remove any files in local directory that are not in remote directory
do_deletes=true
# Don't do a recursive listing
recursive=false