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nextflow.config
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profiles {
standard {
process {
withName: 'CreateGFF' {
cpus = 8
memory = 10.GB
}
withName: 'CreateGFF_Genbank' {
cpus = 8
memory = 10.GB
}
withName: 'Alignment_prep' {
cpus = 1
memory = 1.GB
}
withName: 'Align_samples' {
cpus = 8
memory = 10.GB
}
withName: 'Pipeline_prep' {
cpus = 8
memory = 10.GB
}
withName: 'Create_VCF' {
cpus = 1
memory = 1.GB
}
withName: 'Ref_done' {
cpus = 1
memory = 1.GB
}
withName: 'Extract_variants' {
cpus = 1
memory = 1.GB
}
withName: 'Annotate_complex' {
cpus = 1
memory = 1.GB
}
withName: 'Annotate_complex_first_passage' {
cpus = 1
memory = 1.GB
}
withName: 'Generate_output' {
cpus = 1
memory = 1.GB
}
}
}
Cloud {
process {
withName: 'CreateGFF' {
cpus = 48
memory = 96.GB
}
withName: 'CreateGFF_Genbank' {
cpus = 48
memory = 96.GB
}
withName: 'Alignment_prep' {
cpus = 4
memory = 8.GB
}
withName: 'Align_samples' {
cpus = 47
memory = 95.GB
}
withName: 'Pipeline_prep' {
cpus = 31
memory = 63.GB
}
withName: 'Create_VCF' {
cpus = 4
memory = 8.GB
}
withName: 'Ref_done' {
cpus = 4
memory = 8.GB
}
withName: 'Extract_variants' {
cpus = 4
memory = 8.GB
}
withName: 'Annotate_complex' {
cpus = 4
memory = 8.GB
}
withName: 'Annotate_complex_first_passage' {
cpus = 4
memory = 8.GB
}
withName: 'Generate_output' {
cpus = 4
memory = 8.GB
}
}
}
laptop {
process {
withName: 'CreateGFF' {
cpus = 4
memory = 8.GB
}
withName: 'Alignment_prep' {
cpus = 1
memory = 1.GB
}
withName: 'Align_samples' {
cpus = 4
memory = 8.GB
}
withName: 'Pipeline_prep' {
cpus = 4
memory = 8.GB
}
withName: 'Create_VCF' {
cpus = 1
memory = 1.GB
}
withName: 'Ref_done' {
cpus = 1
memory = 1.GB
}
withName: 'Extract_variants' {
cpus = 1
memory = 1.GB
}
withName: 'Annotate_complex' {
cpus = 1
memory = 1.GB
}
withName: 'Annotate_complex_first_passage' {
cpus = 1
memory = 1.GB
}
withName: 'Generate_output' {
cpus = 1
memory = 1.GB
}
}
}
}