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DESCRIPTION
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DESCRIPTION
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Package: alpine
Title: alpine
Version: 1.5.3
Author: Michael Love, Rafael Irizarry
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Description: Fragment sequence bias modeling and correction for RNA-seq
transcript abundance estimation.
License: GPL (>=2)
VignetteBuilder: knitr
Depends: R (>= 3.3)
Imports: Biostrings, IRanges, GenomicRanges, GenomicAlignments,
Rsamtools, SummarizedExperiment, GenomicFeatures, speedglm,
splines, graph, RBGL, stringr, stats, methods, graphics,
GenomeInfoDb, S4Vectors
Suggests: knitr, testthat, alpineData, rtracklayer, ensembldb,
BSgenome.Hsapiens.NCBI.GRCh38, RColorBrewer
biocViews: Sequencing, RNASeq, AlternativeSplicing,
DifferentialSplicing, GeneExpression, Transcription, Coverage,
BatchEffect, Normalization, Visualization, QualityControl
RoxygenNote: 5.0.1