NAMESPACE

# Generated by roxygen2: do not edit by hand

export(buildFragtypes)
export(estimateAbundance)
export(extractAlpine)
export(fitBiasModels)
export(getFragmentWidths)
export(getReadLength)
export(mergeGenes)
export(normalizeDESeq)
export(plotFragLen)
export(plotGC)
export(plotGRL)
export(plotOrder0)
export(plotOrder1)
export(plotOrder2)
export(plotRelPos)
export(predictCoverage)
export(splitGenesAcrossChroms)
export(splitLongGenes)
import(Biostrings)
import(GenomicAlignments)
import(GenomicRanges)
import(IRanges)
import(Rsamtools)
import(SummarizedExperiment)
importFrom(GenomeInfoDb,keepSeqlevels)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomicFeatures,mapToTranscripts)
importFrom(RBGL,connectedComp)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(graph,ftM2graphNEL)
importFrom(graphics,abline)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,segments)
importFrom(methods,as)
importFrom(methods,is)
importFrom(speedglm,speedglm.wfit)
importFrom(splines,ns)
importFrom(stats,density)
importFrom(stats,dpois)
importFrom(stats,formula)
importFrom(stats,glm)
importFrom(stats,model.matrix)
importFrom(stats,poisson)
importFrom(stringr,str_c)