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Inconsistent getPossibleDLoci algorithm between paired and single VDJCA aligners #408

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dbolotin opened this issue Aug 16, 2018 · 0 comments
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Inconsistent getPossibleDLoci algorithm between paired and single VDJCA aligners #408

dbolotin opened this issue Aug 16, 2018 · 0 comments
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2.1.12

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mixcr/src/main/java/com/milaboratory/mixcr/vdjaligners/VDJCAlignerPVFirst.java

Line 835 in c392439

public static Chains getPossibleDLoci(PairedHit[] vHits, PairedHit[] jHits, VDJCHit[] cHits) {

mixcr/src/main/java/com/milaboratory/mixcr/vdjaligners/VDJCAlignerS.java

Line 415 in c392439

public Chains getPossibleDLoci() {

Also check algorithm in clone aligner (factory).
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