If you want to include a new data function in TDC, let us know here ⬇️

[kexinhuang12345]

Hi!

Feel free to drop any pointers for a new data function that you find may be useful for TDC users here!

We would love to discuss it with you and also work with you to include it in TDC!

[abearab]

Suggesting a new data function: Knowledge Graph Mastery

In this PR mims-harvard/TDC#207, I started a few features that I believe can help to build, handle, explore, and integrate knowledge graphs based on the final PrimeKG data format (i.e. simply a pandas data frame with same column names). Here I mentioned a bit more details as part of a discussion with @payalchandak, @ayushnoori, and @marinkaz.

The proposed Knowledge Graphs data function can be useful for:

1. Future updates of PrimeKG
2. Building new graphs from other resources and datasets, e.g. building an extended version of primekg that include OMIM phenotypes and genes PrimeKG#12
3. Building context-specific knowledge graphs, see "Future directions" in Machine learning predicts cellular response to genetic perturbation. Nat Biotechnol (2023).

Also, I have already used this functionality for other use cases and can provide more updates moving forward.

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Note that the data function title suggested by chatGPT haha