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ci-cd.yml
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# Triggered on push and pull request events, schedule for data update
on:
push:
pull_request:
schedule:
# every day at 21 UTC
- cron: "0 21 * * *"
name: CI-CD
# renv with GitHub actions: https://rstudio.github.io/renv/articles/ci.html#github-actions
jobs:
CI-CD:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
# We keep a matrix for convenience, but we would typically just run on one
# single OS and R version, aligned with the target deployment environment
matrix:
config:
- {os: ubuntu-latest, r: '4.2.1'}
env:
# Access token for GitHub
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
# Preserve package sources for informative references in case of errors
R_KEEP_PKG_SOURCE: yes
steps:
- name: Checkout repo
uses: actions/checkout@v3
- name: Setup R
uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
# Enable RStudio Package Manager to speed up package installation
use-public-rspm: true
- name: Cache packages
uses: actions/cache@v3
with:
path: ${{ env.RENV_PATHS_ROOT }}
key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }}
restore-keys: |
${{ runner.os }}-renv-
- name: Install system dependencies
env:
RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
run: |
Rscript -e "renv::install('r-hub/sysreqs')"
sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
sudo -s eval "$sysreqs"
- name: Activate renv and restore packages with cache
uses: r-lib/actions/setup-renv@v2
- name: Fetch and rebuild latest data
if: github.event_name == 'schedule'
run: |
pkgload::load_all(export_all = FALSE, helpers = FALSE, attach_testthat = FALSE)
build_data()
shell: Rscript {0}
- name: Install R CMD check
run: install.packages("rcmdcheck")
shell: Rscript {0}
- name: Check package
uses: r-lib/actions/check-r-package@v2
- name: Commit and push updated data
if: github.event_name == 'schedule'
run: |
git config --local user.email "actions@github.com"
git config --local user.name "GitHub Actions"
git add inst/datahub/\*
git commit -m "Update DataHub data" || echo "No changes to commit"
git pull --ff-only
git push origin
- name: Deploy to shinyapps.io
# Continuous deployment only for pushes to the main / master branch
# if: github.ref == 'refs/heads/main' || github.ref == 'refs/heads/master'
env:
SHINYAPPS_ACCOUNT: ${{ secrets.SHINYAPPS_ACCOUNT }}
SHINYAPPS_TOKEN: ${{ secrets.SHINYAPPS_TOKEN }}
SHINYAPPS_SECRET: ${{ secrets.SHINYAPPS_SECRET }}
run: Rscript deploy/deploy-shinyapps.R