pyproject.toml

[project]
name = "meds-tab"
dynamic = ["version"]
authors = [
  { name="Matthew McDermott", email="mattmcdermott8@gmail.com" },
  { name="Nassim Oufattole", email="noufattole@gmail.com" },
  { name="Teya Bergamaschi", email="teyabergamaschi@gmail.com" },
]
description = "Scalable Tabularization of MEDS format Time-Series data"
readme = "README.md"
requires-python = ">=3.11"
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
]
dependencies = [
  "polars>=1.6.0,<=1.17.1", "pyarrow", "loguru", "hydra-core==1.3.2", "numpy", "scipy<1.14.0", "pandas", "tqdm", "xgboost",
  "scikit-learn", "hydra-optuna-sweeper", "hydra-joblib-launcher", "ml-mixins", "meds>=0.3.3", "meds-transforms>=0.0.7",
]

[tool.setuptools_scm]

[project.scripts]
meds-tab-describe = "MEDS_tabular_automl.scripts.describe_codes:main"
meds-tab-tabularize-static = "MEDS_tabular_automl.scripts.tabularize_static:main"
meds-tab-tabularize-time-series = "MEDS_tabular_automl.scripts.tabularize_time_series:main"
meds-tab-cache-task = "MEDS_tabular_automl.scripts.cache_task:main"
meds-tab-xgboost = "MEDS_tabular_automl.scripts.launch_model:main"
meds-tab-model = "MEDS_tabular_automl.scripts.launch_model:main"
meds-tab-autogluon = "MEDS_tabular_automl.scripts.launch_autogluon:main"
generate-subsets = "MEDS_tabular_automl.scripts.generate_subsets:main"


[project.optional-dependencies]
dev = ["pre-commit<4"]
tests = ["pytest", "pytest-cov", "rootutils"]
profiling = ["mprofile", "matplotlib"]
autogluon = ["autogluon; python_version=='3.11.*'"]  # Environment marker to restrict AutoGluon to Python 3.11
docs = [
    "mkdocs==1.6.0",
    "mkdocs-gen-files==0.5.0",
    "mkdocs-get-deps==0.2.0",
    "mkdocs-git-authors-plugin==0.9.0",
    "mkdocs-git-revision-date-localized-plugin==1.2.7",
    "mkdocs-literate-nav==0.6.1",
    "mkdocs-material==9.5.33",
    "mkdocs-material-extensions==1.3.1",
    "mkdocs-section-index==0.3.9",
    "mkdocs-snippets==1.3.0",
    "mkdocstrings==0.25.2",
    "mkdocstrings-python==1.10.8"
]

[build-system]
requires = ["setuptools>=61.0", "setuptools-scm>=8.0", "wheel"]
build-backend = "setuptools.build_meta"

[project.urls]
Homepage = "https://github.com/mmcdermott/MEDS_Tabular_AutoML"
Issues = "https://github.com/mmcdermott/MEDS_Tabular_AutoML/issues"