You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Dear StringDB team:
I run below code, it went all fine until the last line, could u help, many thanks.
And I tried the solution in jeroen/curl#193, it didnot work.
Dear StringDB team:
I run below code, it went all fine until the last line, could u help, many thanks.
And I tried the solution in jeroen/curl#193, it didnot work.
`string_db <- STRINGdb$new( version="11",
species=10116,
score_threshold=700)
diff_exp_example1 = read.csv("D2_Model_vs_D2_EPC.glmLRT.stringDB.csv")
example1_mapped <- string_db$map(diff_exp_example1,
"genes",
removeUnmappedRows = TRUE )
hit = example1_mapped$STRING_id
string_db$plot_network(hit) # error shown below
`
Schannel: CertGetCertificateChain trust error CERT_TRUST_IS_UNTRUSTED_ROOT
Sessioninfo as follows:
Matrix products: default
locale:
[1] LC_COLLATE=Chinese (Simplified)_China.utf8
[2] LC_CTYPE=Chinese (Simplified)_China.utf8
[3] LC_MONETARY=Chinese (Simplified)_China.utf8
[4] LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_China.utf8
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
other attached packages:
[1] visNetwork_2.1.2 STRINGdb_2.10.1
loaded via a namespace (and not attached):
[1] Rcpp_1.0.13 compiler_4.2.2 RColorBrewer_1.1-3
[4] plyr_1.8.9 bitops_1.0-8 tools_4.2.2
[7] digest_0.6.37 bit_4.0.5 jsonlite_1.8.8
[10] RSQLite_2.3.7 memoise_2.0.1 lifecycle_1.0.4
[13] pkgconfig_2.0.3 png_0.1-8 rlang_1.1.4
[16] igraph_2.0.3 DBI_1.2.3 cli_3.6.3
[19] rstudioapi_0.16.0 proto_1.0.0 fastmap_1.2.0
[22] vctrs_0.6.5 htmlwidgets_1.6.4 gtools_3.9.5
[25] caTools_1.18.3 bit64_4.0.5 sqldf_0.4-11
[28] plotrix_3.8-4 hash_2.2.6.3 gsubfn_0.7
[31] blob_1.2.4 magrittr_2.0.3 gplots_3.1.3.1
[34] htmltools_0.5.8.1 KernSmooth_2.23-24 RCurl_1.98-1.16
[37] cachem_1.1.0 chron_2.3-61
The text was updated successfully, but these errors were encountered: