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Major behaviour change from 1.0.7 to 1.1.1 #24
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I tested again on my data sets and could not trigger the bug you met. Is there a way for me to access the data set you use? If not, can you show me the summary of correction on screen output by Lighter? Thanks. |
I found the issue. If you compile with default See the output messages below:
This is
This is
|
Ping @mourisl - any ideas? |
As a workaround you can use |
Today I upgraded from lighter 1.0.7 to 1.1.1 and I first noticed a problem when 1.1.1 was outputting different number of reads in the two output files, and then noticed it was also passing far fewer reads.
This is the command line:
This is the difference in read counts:
Any ideas?
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