Singularity.1.3.3.el7

bootstrap:docker
From:centos:7

%post

yum -y upgrade

# OpenHPC repo
yum -y install https://github.com/openhpc/ohpc/releases/download/v1.3.GA/ohpc-release-1.3-1.el7.x86_64.rpm

yum -y install perl

yum -y install \
    ohpc-base \
    ohpc-base-compute \
    ohpc-autotools \
    ohpc-gnu7-io-libs \
    ohpc-gnu7-mpich-parallel-libs \
    ohpc-gnu7-mvapich2-parallel-libs \
    ohpc-gnu7-openmpi3-parallel-libs \
    ohpc-gnu7-perf-tools \
    ohpc-gnu7-python-libs \
    ohpc-gnu7-serial-libs \
    openssh-clients

yum -y install lmod-defaults-gnu7-openmpi3-ohpc

cat << EOF > /etc/profile.d/lmod.sh
#!/bin/sh
# -*- shell-script -*-
########################################################################
#  This is the system wide source file for setting up
#  modules:
#
########################################################################

# NOOP if running under known resource manager
if [[ ! -z "$SLURM_NODELIST" && -z "$SINGULARITY_CONTAINER" ]];then
     return
fi

if [[ ! -z "$PBS_NODEFILE" && -z "$SINGULARITY_CONTAINER" ]];then
    return
fi

export LMOD_SETTARG_CMD=":"
export LMOD_FULL_SETTARG_SUPPORT=no
export LMOD_COLORIZE=no
export LMOD_PREPEND_BLOCK=normal

if [ $EUID -eq 0 ]; then
    export MODULEPATH=/opt/ohpc/admin/modulefiles:/opt/ohpc/pub/modulefiles
else
    export MODULEPATH=/opt/ohpc/pub/modulefiles
fi

export BASH_ENV=/opt/ohpc/admin/lmod/lmod/init/bash

# Initialize modules system
. /opt/ohpc/admin/lmod/lmod/init/bash >/dev/null

if [[ -n "$SINGULARITY_CONTAINER" ]];then
    module purge
    clearMT
fi

# Load baseline OpenHPC environment
module try-add ohpc

EOF

cat << EOF > /etc/profile.d/lmod.csh
#!/bin/csh
# -*- shell-script -*-
########################################################################
#  This is the system wide source file for setting up
#  modules:
#
########################################################################

if ( $?SLURM_NODELIST && ! $?SINGULARITY_CONTAINER ) then
    exit 0
endif

if ( $?PBS_NODEFILE && ! $?SINGULARITY_CONTAINER ) then
    exit 0
endif

setenv LMOD_SETTARG_CMD ":"
setenv LMOD_FULL_SETTARG_SUPPORT "no"
setenv LMOD_COLORIZE "no"
setenv LMOD_PREPEND_BLOCK "normal"


if ( `id -u` == "0" ) then
   setenv MODULEPATH  "/opt/ohpc/admin/modulefiles:/opt/ohpc/pub/modulefiles"
else   
   setenv MODULEPATH "/opt/ohpc/pub/modulefiles"
endif

# Initialize modules system
source /opt/ohpc/admin/lmod/lmod/init/csh >/dev/null

if ( $?SINGULARITY_CONTAINER ) then
    module purge
    clearMT
endif

# Load baseline OpenHPC environment
module try-add ohpc 

EOF

# verification
ls -l /opt/ohpc/pub

# build info
echo "Timestamp:" `date --utc` | tee /image-build-info.txt