terminate called after throwing an instance of 'std::length_error

[fka21]

Hello!

I have encountered an error while running nucmer (most recent version) recently:

Here is the command used:
nucmer -t 20 -p nucmer.hifiasm_hic_hap2_scaffolds_final_to_hifiasm_hic_hap1_scaffolds_final.l100.c500/nucmer.hifiasm_hic_hap2_scaffolds_final_to_hifiasm_hic_hap1_scaffolds_final.l100.c500 --maxmatch -l 100 -c 500 sSmed_assembly/07_Scaffolding/bwa_yahs/3_scaffolding/hifiasm_hic_hap1_scaffolds_final.fa sSmed_assembly/07_Scaffolding/bwa_yahs/3_scaffolding/hifiasm_hic_hap2_scaffolds_final.fa

For a while it is running and afterwards I get the following error message:
terminate called after throwing an instance of "std::length_error" what(): vector::_M_fill_insert

Interestingly the same command ran without errors on the same assemblies prior to scaffolding.

Any help would be greatly appreciated.

Cheers,
Ferenc

[DayTimeMouse]

Hi,

I have the same issue. Do you have any ideas for this?

Thanks in advance.