You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I successfully ran Guppy for basecalling, and the process completed without any errors. However, I noticed that no FASTQ files were generated in the output directory.
Here is the output from the run:
ONT Guppy duplex basecalling software version 6.0.6+8a98bbc
config file: /input/model.cfg
model file: /input/model.jsn
input path: /input/demo
save path: output/call_res
chunk size: 2000
chunks per runner: 256
minimum qscore: 0
records per file: 5000
num basecallers: 4
gpu device: cuda:1
kernel path:
runners per device: 12
Found 2 fast5 files to process.
Init time: 1676 ms
0% 10 20 30 40 50 60 70 80 90 100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
Caller time: 2102 ms, Samples called: 465044, samples/s: 221239
Finishing up any open output files.
Failed to send ping to https://ping-dev.oxfordnanoportal.com/basecall: Failed to connect to ping-dev.oxfordnanoportal.com port 443: No route to host: Couldn't connect to server
Basecalling completed successfully.
I successfully ran Guppy for basecalling, and the process completed without any errors. However, I noticed that no FASTQ files were generated in the output directory.
Here is the output from the run:
Here is the generated sequencing_summary.txt:
The text was updated successfully, but these errors were encountered: