test-package.yml

name: Tests

on: [push, pull_request]

jobs:
  build:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version:
          - "3.9"
          - "3.10"
          - "3.11"
          # - "3.12"
    steps:
      # This cancels any such job that is still runnning
    - name: Cancel Previous Runs
      uses: styfle/cancel-workflow-action@0.6.0
      with:
        access_token: ${{ github.token }}
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install Linux libraries
      run: |
        sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \
          libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \
          libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0
    - name: Install dependencies
      run: |
        pip install --upgrade pip
        pip install zstandard==0.16.0
        pip install numpy
        pip install flybrains
        pip install pyarrow
    - name: Install fafbseb
      run: pip install -e .
    - name: Report dependency versions
      run: pip freeze -r requirements.txt
    - name: Set FlyWire CAVE token for tests
      env:
        CAVE_TOKEN: ${{ secrets.cave_token }}
      run: |
        python -c "from fafbseg import flywire;flywire.set_chunkedgraph_secret('$CAVE_TOKEN')"
    - name: Test with pytest
      run: |
        export NAVIS_HEADLESS=TRUE
        pytest --verbose