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Cz/fix issue#32 #38

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ChuanyiZ
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Fix issue #32 :

  • Add task spruce_to_physigs
  • Fix cluster_transform to work with mutation IDs in both bytes object and string format
  • Embed ref and var nucleotide into mutation IDs
  • Update script in task physigs
  • Output tree edges by SPRUCE
  • Add workflow vcf_to_trees

@ChuanyiZ ChuanyiZ linked an issue Jul 13, 2021 that may be closed by this pull request
Physigs input transformer #32
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@pgroves
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pgroves commented Jul 14, 2021

Chuanyi - it will be a few days before I get to this but please trust it is on my todo list to review. thanks for your efforts

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Physigs input transformer
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@ChuanyiZ @pgroves