Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[ENH] - Update libstdc++.so.6 on Nebari #94

Open
kcpevey opened this issue Sep 8, 2023 · 5 comments
Open

[ENH] - Update libstdc++.so.6 on Nebari #94

kcpevey opened this issue Sep 8, 2023 · 5 comments

Comments

@kcpevey
Copy link

kcpevey commented Sep 8, 2023

Feature description

Nebari comes with libstdc++.so.6 installed, but its not up to date.

scipy is looking for libstdc++.so.6: version 'GLIBCXX_3.4.29' but this isn't available on Nebari.

I can install an updated version into my conda env by installing this package libstdcxx-ng. However, scipy will still attempt to look for it here /lib/x86_64-linux-gnu/libstdc++.so.6.

The workaround is to add an extra entry to my LD_LIBRARY_PATH that points to my conda env where its installed.

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/conda/kcpevey@quansight.com/envs/kcpevey@quansight.com-alpha/lib

This solution works but is rather hacky.

Value and/or benefit

An up to date Nebari that can be used without workarounds.

Anything else?

No response

@kcpevey kcpevey added the type: enhancement 💅🏼 New feature or request label Sep 8, 2023
@iameskild
Copy link
Member

Sounds good to me, I think we only need to add it apt.txt for the JupyterLab images.

@iameskild
Copy link
Member

@kcpevey to confirm, we need to include this in the upcoming release right?

@kcpevey
Copy link
Author

kcpevey commented Sep 12, 2023

@iameskild this could be pushed to the next release

@iameskild
Copy link
Member

If this package is already included but needs to be updated, perhaps rebuilding the image will be sufficient.

@kcpevey
Copy link
Author

kcpevey commented Sep 14, 2023

This is completely outside my realm of knowledge so I'm no help here.

@iameskild iameskild transferred this issue from nebari-dev/nebari Nov 8, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
Status: Follow up 📥
Development

No branches or pull requests

2 participants