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Hi there,
we used the command ./TENET OB_temp.csv 10 OB_PAGApseudotime.txt OB_PAGAcell_select.txt 1
The input file included 3000 genes and 6424 cells.
We expected the matrix output file as usual. However we got
10 files called:
TE_out_aaa.csv
TE_out_aab.csv
...
TE_out_aaj.csv
Sorry for the late response.
I am not sure why there is no matrix file. I guess it is because the last four lines of codes were not performed due to the OS difference.
You can just run the following lines if you use linux:
Hi there,
we used the command
./TENET OB_temp.csv 10 OB_PAGApseudotime.txt OB_PAGAcell_select.txt 1
The input file included 3000 genes and 6424 cells.
We expected the matrix output file as usual. However we got
10 files called:
TE_out_aaa.csv
TE_out_aab.csv
...
TE_out_aaj.csv
They all look similar
The last files ends with
2999,3000
It seems like those values depict the indices of the matrix. However, we would then expect only one value for each gene-pair.
Why there are two and why didn't we got the expected matrix output?
cheers
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