mkdocs.yml

site_name: Ensemblex
site_url: https://neurobioinfo.github.io/
nav:
    - Home: index.md
    - The Ensemblex algorithm:
        - 'Ensemblex algorithm overview': overview.md
    - The Ensemblex Pipeline:
        - 'Ensemblex pipeline overview' : overview_pipeline.md
        - 'Installation' : installation.md
        - 'Step 1: Set up' : Step0.md
        - 'Step 2: Preparation of input files' : Step1.md
        - 'Step 3: Genetic demultiplexing by constituent tools' : Step2.md
        - 'Step 4: Application of Ensemblex' : Step3.md
    - Documentation:    
        - 'Execution parameters' : reference.md 
        - 'Ensemblex outputs': outputs.md  
    - Tutorial:
        - 'Downloading data' : midbrain_download.md
        - 'Ensemblex with prior genotype information' : Dataset1.md
    - About:
        - 'Help and Feedback': contributing.md
        - 'Acknowledgement': Acknowledgement.md
        - 'License': 'LICENSE.md'
theme: readthedocs