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156 Open 295 Closed
156 Open 295 Closed
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Issues list

Retrain model with user image
#833 opened Oct 11, 2024 by mathieuboudreau
@hermancollin
5
Add link to generalist preprint in model_cards.py documentation category: the change is documentation related to AxonDeepSeg
#832 opened Sep 26, 2024 by hermancollin
Confusion between short and long-form model name
#831 opened Sep 26, 2024 by mathieuboudreau
3
Create CLI for pytest-ing in ADS
#822 opened Aug 30, 2024 by mathieuboudreau
Change installation procedure to SCT/ST-style shell script install ci installation category: the change alters the installation of AxonDeepSeg
#820 opened Aug 8, 2024 by mathieuboudreau
1
@joshuacwnewton
Extension to Palmgren Silver Images
#817 opened Jul 27, 2024 by abadgerw
3
Auto-fill models into our ReadTheDocs/Sphinx for auto-update
#811 opened Jun 21, 2024 by mathieuboudreau
@mathieuboudreau
3
Handle PIP - archive or delete?
#808 opened Jun 10, 2024 by mathieuboudreau
6
our imread and imwrite are barely tested good first issue Issues that new contributors can easily work on nnunetv2 testing category: the change is test related to AxonDeepSeg
#806 opened Jun 7, 2024 by hermancollin
1
Should we remove ads_plugin.py? fsleyes context: GUI, Related to FSLeyes plugin
#804 opened May 22, 2024 by hermancollin
3
[napari plugin] Display better information in case there is an error
#802 opened May 12, 2024 by Stoyan-I-A
@Stoyan-I-A
Fresh git clone is ~150MB due to large files in git history
#793 opened Mar 11, 2024 by joshuacwnewton
8
Add GUI gif in README documentation category: the change is documentation related to AxonDeepSeg GUI readme context: the changes in the readme file
#791 opened Mar 1, 2024 by hermancollin
@hermancollin
3
Unused data on OSF
#787 opened Feb 12, 2024 by hermancollin
Axon Discrimination for QC
#786 opened Feb 12, 2024 by hermancollin
Segment nerve section to compute axon density feature category: the change introduces a new functionality to AxonDeepSeg good internship project models context morphometrics related to morphometrics script nnunetv2 priority:HIGH processing context: pre- or post-processing training context
#782 opened Jan 15, 2024 by hermancollin
2
Output morphometric file and histogram PNGs of key metrics (eg axon diameter, myelin thickness, g-ratio) with every segmentation run.
#779 opened Jan 9, 2024 by mathieuboudreau
Morphometrics computation for perimeter doesn't reflect outermost perimeter bug category: the change fixes a error in the code enhancement category: the change expands an existing functionality or refactoring morphometrics related to morphometrics script
#776 opened Dec 3, 2023 by hermancollin
10
Add Quality Assurance features good internship project
#760 opened Oct 13, 2023 by mathieuboudreau
3 tasks
3
Create testimonials page feature category: the change introduces a new functionality to AxonDeepSeg
#759 opened Sep 29, 2023 by jcohenadad
7 of 8 tasks
13
Build fails due to onnxruntime update
#757 opened Sep 25, 2023 by mathieuboudreau
Sciatic nerve toluidine blue image analysis on AxonDeepSeg
#754 opened Aug 17, 2023 by apuer11
7
How to change pixel size in napari GUI
#747 opened Jun 21, 2023 by hermancollin
3
Error trying to train models "raise source.error("bad escape %s" % escape, len(escape)) re.error: bad escape \m at position 10"
#743 opened Jun 2, 2023 by GrimmSnark
2
16 bit tifs not converted properly to 8 bit when images are loaded
#737 opened Apr 21, 2023 by mathieuboudreau
@mathieuboudreau
14
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