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move contaminant sequence detection to before collapsing duplicates #355

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ggabernet opened this issue Oct 23, 2024 · 0 comments
Open

move contaminant sequence detection to before collapsing duplicates #355

ggabernet opened this issue Oct 23, 2024 · 0 comments
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enhancement New feature or request

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@ggabernet
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Description of feature

For bulk QC and filtering, we have the option to detect sequence contaminants. This step should be performed prior to presto CollapseSeq so that we can check that contaminants share the same UMI barcode as well.
@ggabernet ggabernet added the enhancement New feature or request label Oct 23, 2024
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