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Cannot get property 'args' on null object error #53
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bug
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The issue is that test.conf doesn't have config details for multiqc, and other tools. At the moment, it only has config info for bcftools_filter and alignpseudogenomes. |
We have noticed that with Nextflow 21.04.1, the pipeline test profile completes successfully. Later versions such as 22.04.04 fail with the |
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Hi,
Thanks for building this pipeline! I'm running into an error that I haven't been able to solve, copied below. Thanks in advance!
command:
nextflow run nf-core/bactmap -profile test,singularity
error seen:
Line 38 in the script I believe is:
multiqc_options.args += params.multiqc_title ? Utils.joinModuleArgs(["--title \"$params.multiqc_title\""]) : ''
(I thus tried running the same command but with multiqc turned off, ie
nextflow run nf-core/bactmap -profile test,singularity --skip_multiqc
but the same null args error occurred).And the info in the .nextflow.log reads:
I tried running another nf-core pipeline (nf-core/mag) and it got past this step & didn't return the same "null args" error, so it seems so far to be specific to this pipeline.
Specs:
Thanks in advance for your help with this!
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