hasta.config

// Profile config names for nf-core/configs
params {
    config_profile_description   = 'Hasta, a local cluster setup at Clinical Genomics, Stockholm.'
    config_profile_contact       = 'Clinical Genomics, Stockholm'
    config_profile_url           = 'https://github.com/Clinical-Genomics'
    priority                     = null
    clusterOptions               = null
    schema_ignore_params         = "priority,clusterOptions"
    validationSchemaIgnoreParams = "priority,clusterOptions,schema_ignore_params"
}

singularity {
    enabled      = true
    envWhitelist = ['_JAVA_OPTIONS']
}

params {
    max_memory = 180.GB
    max_cpus   = 36
    max_time   = 336.h
}

process {
    resourceLimits = [
        memory: 180.GB,
        cpus: 36,
        time: 336.h
    ]
    clusterOptions = { "-A ${params.priority} ${params.clusterOptions ?: ''}" }
}

executor {
    name              = 'slurm'
    pollInterval      = '2 min'
    queueStatInterval = '5 min'
    submitRateLimit   = '2 sec'
}

profiles {
    stub_prio {
        params {
            priority       = 'development'
            clusterOptions = "--qos=low"
            max_memory     = 6.GB
            max_cpus       = 1
            max_time       = 1.h
        }

        process {
            resourceLimits = [
                memory: 6.GB,
                cpus: 1,
                time: 1.h
            ]
        }
    }

    dev_prio {
        params {
            priority       = 'development'
            clusterOptions = "--qos=low"
        }
    }

    prod_prio {
        params {
            priority       = 'production'
            clusterOptions = "--qos=low"
        }
    }
}