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Apply nf-test on funcscan #280

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14 of 24 tasks
louperelo opened this issue May 26, 2023 · 1 comment
Closed
14 of 24 tasks

Apply nf-test on funcscan #280

louperelo opened this issue May 26, 2023 · 1 comment
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@louperelo
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enhancement Improvement for existing functionality
Milestone
2.0 - Brazilian E...

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@louperelo
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louperelo commented May 26, 2023 •
edited by Darcy220606
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Description of feature

See description on nf-test here
See bitesize talk on nf-test implementation here

Modules in this pipeline which will need to have nf-test implemented:

  • abricate/run
  • ampcombi
  • ampir
  • amplify/predict
  • amrfinderplus
  • antismash
  • bakta
  • bioawk
  • custom/dumpsoftwareversions
  • deeparg
  • deepbgc
  • fargene
  • gecco/run
  • gunzip
  • hamronization
  • hmmer/hmmsearch
  • macrel/contigs
  • multiqc
  • prodigal
  • prokka
  • pyrodigal
  • rgi/main
  • tabix/bgzip
  • untar
@louperelo louperelo added the enhancement Improvement for existing functionality label May 26, 2023
@louperelo louperelo self-assigned this Nov 13, 2023
@louperelo louperelo mentioned this issue Nov 21, 2023
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10 tasks
@jfy133 jfy133 added this to the 1.2 - Brazilian Escondidinho milestone Jan 24, 2024
@jfy133 jfy133 mentioned this issue Jan 24, 2024
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10 tasks
@jfy133
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jfy133 commented Jul 12, 2024

Done in with nf-test at pipeline level here

For other modules, these will happen over time

@jfy133 jfy133 closed this as completed Jul 12, 2024
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