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database symlinks don't work #760

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mjfi2sb3 opened this issue Feb 4, 2025 · 1 comment
Closed

database symlinks don't work #760

mjfi2sb3 opened this issue Feb 4, 2025 · 1 comment
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@mjfi2sb3
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mjfi2sb3 commented Feb 4, 2025

Description of the bug

Pointing the mag wf to a database symlink seems to fail.

Command used and terminal output



Relevant files


No response


System information


HPC

SLURM

Singularity

nf-core/mag v3.3.0

      		
    

      
  





        

            


            

              
            

        

      


      
    








      

    



      

  
            

    

      
    

    


      

          @mjfi2sb3
mjfi2sb3




          added
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      Feb 4, 2025

    

  








      

  
      



  

  @jfy133





  


    

      

  

    

        
    
    

  


      
          
  
      
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            jfy133
  

      

      

      commented


        Feb 6, 2025


      
    


  





      


        


  
    

      
          
This is now working, I could replicate the original error and this is now fixed in #762


Please open again @mjfi2sb3 if you still have the problem in -r dev

      		
    

  





        


            

            

              
            

        

      


      

            
  

    
  
    
    

  

  



    












      

  
            

    

      
    

    


      

          @jfy133
jfy133




            closed this as completed


      Feb 6, 2025

    

  


    











  
  

    

      

  





  




  
  

              

  
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          @mjfi2sb3 
        
          @jfy133