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Compile SMOOTHXG for several kinds of SIMD flavours #190

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subwaystation opened this issue Mar 15, 2024 · 0 comments
Open

Compile SMOOTHXG for several kinds of SIMD flavours #190

subwaystation opened this issue Mar 15, 2024 · 0 comments
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enhancement Improvement for existing functionality

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@subwaystation
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Description of feature

This would require that one directly touches the code at https://github.com/pangenome/smoothxg. The idea would be to enable compilation for different SIMD instruction sets and connect these via a bash script as in https://github.com/pangenome/odgi/blob/master/scripts/generate_release.sh.
Additionally in smoothxg one has to set specific SIMD flags for the SPOA and abPOA dependencies.
This could speedup calculations by several times for free!
@subwaystation subwaystation added the enhancement Improvement for existing functionality label Mar 15, 2024
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enhancement Improvement for existing functionality
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Hackathon: May 2024
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@subwaystation