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Add optional trimming of fastq files #455

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jemten opened this issue Dec 18, 2023 · 1 comment · Fixed by #457
Closed

Add optional trimming of fastq files #455

jemten opened this issue Dec 18, 2023 · 1 comment · Fixed by #457
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@Lucpen
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Effort low feature-request Request for a new pipeline feature

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jemten commented Dec 18, 2023

Description of feature

When running low input libraries we are having issues with overrepresentation of polyG sequences in the data coming from the NovaseqX instrument. A possible solution is to include an optional trimming of fastq files with fastp.
@jemten jemten added feature-request Request for a new pipeline feature Effort low labels Dec 18, 2023
@Lucpen Lucpen linked a pull request Dec 18, 2023 that will close this issue
feat add fastp #457
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jemten commented Jan 8, 2024

done

@jemten jemten closed this as completed Jan 8, 2024
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feat add fastp genomic-medicine-sweden/raredisease
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@jemten @Lucpen