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Switch to nf-core version of VEP #477

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jemten opened this issue Jan 12, 2024 · 1 comment

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jemten commented Jan 12, 2024

Let's try to see if we can use the vep version found in nf-core modules rather than the local module.

Also version 111 is out, but that requires an update of the nf-core module. Version 111 has support for a plugin that allows you to annotate variants with pathogenicity scores predicted by VARITY
https://github.com/Ensembl/VEP_plugins/blob/release/111/VARITY.pm
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8715197/

jemten assigned ramprasadn

jemten added this to the Release 1.2.0 milestone

ramprasadn mentioned this issue

Vep update #482

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jemten commented Jan 24, 2024

done in #482

jemten closed this as completed

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