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Germline or somatic #641

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beginner984 opened this issue Oct 24, 2024 · 2 comments
Closed

Germline or somatic #641

beginner984 opened this issue Oct 24, 2024 · 2 comments

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@beginner984
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Sorry,

raredisease pipeline works for germline or somatic mutations? Can be used when there is no normal sample available (tumour only mode)?

Is any restriction for depth of coverage?
@ramprasadn
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Hi @beginner984! raredisease is developed for germline mutations. If you are keen on somatic mutations, I would suggest that you check out https://github.com/nf-core/sarek.

@ramprasadn
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Closing this issue for now, but feel free to reopen this if needed.

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@ramprasadn @beginner984