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Update: the module running UniverSC v1.2.5.1 is stable so I think it is ready to proceed with developing a subworkflow to run it for scRNA-Seq as discussed with @apeltzer.
grst
changed the title
Migrate from Cell Ranger to UniverSC to support other technologies
Add UniverSC aligner to support other technologies
Feb 21, 2023
Description of feature
Expands functionality of Cell Ranger as explained here #31
Implements an open-source alternative (not subject to 10X EULA) which supports other single-cell transcriptomics platforms.
See detailed discussion here:
nf-core/demultiplex#14
nf-core/modules#1644
nf-core/modules#1706
Module details:
GitHub repo: https://github.com/minoda-lab/universc
Docker container: https://hub.docker.com/r/tomkellygenetics/universc
Preprint: https://www.biorxiv.org/content/10.1101/2021.01.19.427209v1 (accepted for publication in Nat. Commun. in press)
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