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Auto rename fastq files for cellranger input #214

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vjmarteau opened this issue Mar 28, 2023 · 2 comments
Closed

Auto rename fastq files for cellranger input #214

vjmarteau opened this issue Mar 28, 2023 · 2 comments
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@sandrocarollo
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enhancement New feature or request

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@vjmarteau
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Description of feature

Cellranger requires the fastq files to follow a specific pattern. It would be nice to have the pipeline taking care of renaming the files.
One possibility would be to create a symlink for each file with the required pattern using regex.
@vjmarteau vjmarteau added the enhancement New feature or request label Mar 28, 2023
@vjmarteau vjmarteau moved this from Todo to In Progress in nf-core Hackathon March 2023 Mar 28, 2023
@grst
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grst commented Mar 28, 2023

See also #147, #195

@grst
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grst commented Jun 14, 2023

Closing in favor of #241

@grst grst closed this as completed Jun 14, 2023
@github-project-automation github-project-automation bot moved this from In Progress to Done in nf-core Hackathon March 2023 Jun 14, 2023
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@sandrocarollo sandrocarollo

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enhancement New feature or request
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nf-core Hackathon March 2023
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@grst @sandrocarollo @vjmarteau