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quantify off-target improvements from "mopping up" rDNA reads #14

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nickp60 opened this issue Jun 30, 2020 · 0 comments
Open

quantify off-target improvements from "mopping up" rDNA reads #14

nickp60 opened this issue Jun 30, 2020 · 0 comments
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nickp60 commented Jun 30, 2020

As per discussion with @davidjstudholme, quantify assembly metrics of rDNA-masked assemblies to determine the effect of removing complications of rDNA assembly via riboSeed. Do assemblies outside of these regions improve?

  • mask rDNA and flanking regions
  • run QUAST of masked assemblies
@nickp60 nickp60 self-assigned this Jun 30, 2020
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