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chrisgorgochrisgorgo
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Merge pull request #45 from poldracklab/oesteban-patch-1
[FIX] MagneticFieldStrength should be float
2 parents 37fa6b3 + fd953b1 commit aa56113

11 files changed

+100
-100
lines changed

‎dockereve-master/eve-app/settings.py

+1-1
Original file line numberDiff line numberDiff line change
@@ -42,7 +42,7 @@
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'InversionTime': {'type': 'float'},
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'MRAcquisitionType': {'type': 'string'},
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'MRTransmitCoilSequence': {'type': 'string'},
45-
'MagneticFieldStrength': {'type': 'integer'},
45+
'MagneticFieldStrength': {'type': 'float'},
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'Manufacturer': {'type': 'string'},
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'ManufacturersModelName': {'type': 'string'},
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'MatrixCoilMode': {'type': 'string'},

‎test/T1w/missingField/sub-10159_T1w.json

+90-90
Original file line numberDiff line numberDiff line change
@@ -1,94 +1,94 @@
11
{
2-
"snr_wm": 11.248504688892124,
3-
"summary_bg_p95": 12.0,
4-
"InversionTime": 1.1,
5-
"fber": 26.33627700805664,
6-
"DeviceSerialNumber": "35343",
7-
"snrd_csf": 26.613233468186966,
8-
"InPlanePhaseEncodingDirection": "ROW",
9-
"summary_csf_stdv": 32.83399963378906,
10-
"snrd_gm": 44.12607332564048,
11-
"size_x": 176,
12-
"size_y": 256,
13-
"size_z": 256,
14-
"AcquisitionMatrix": "0/256/256/0",
15-
"ProtocolName": "MPRAGE - BWM",
16-
"summary_csf_p05": 68.0,
17-
"icvs_wm": 0.3610708502595193,
18-
"RepetitionTime": 2.53,
19-
"summary_wm_stdv": 35.2022590637207,
20-
"snrd_wm": 60.80321593566894,
21-
"MagneticFieldStrength": 3,
22-
"TotalScanTimeSec": 363,
23-
"MRAcquisitionType": "3D",
24-
"snr_total": 7.911386668025524,
25-
"icvs_gm": 0.3959101040697155,
26-
"summary_gm_mean": 211.44973754882812,
27-
"rpve_csf": 83261.9375,
28-
"tpm_overlap_wm": 0.5890556573867798,
29-
"snrd_total": 43.8475075764988,
30-
"PixelBandwidth": 200,
31-
"ScanningSequence": "GR/IR",
32-
"summary_csf_p95": 170.0,
33-
"spacing_x": 1.0,
34-
"FlipAngle": 7,
35-
"summary_gm_k": -0.6324611944326,
36-
"snr_gm": 8.794440881363833,
37-
"icvs_csf": 0.2430190456707652,
38-
"PatientPosition": "HFS",
39-
"SequenceName": "*tfl3d1_ns",
2+
"snr_wm": 11.248504688892124,
3+
"summary_bg_p95": 12.0,
4+
"InversionTime": 1.1,
5+
"fber": 26.33627700805664,
6+
"DeviceSerialNumber": "35343",
7+
"snrd_csf": 26.613233468186966,
8+
"InPlanePhaseEncodingDirection": "ROW",
9+
"summary_csf_stdv": 32.83399963378906,
10+
"snrd_gm": 44.12607332564048,
11+
"size_x": 176,
12+
"size_y": 256,
13+
"size_z": 256,
14+
"AcquisitionMatrix": "0/256/256/0",
15+
"ProtocolName": "MPRAGE - BWM",
16+
"summary_csf_p05": 68.0,
17+
"icvs_wm": 0.3610708502595193,
18+
"RepetitionTime": 2.53,
19+
"summary_wm_stdv": 35.2022590637207,
20+
"snrd_wm": 60.80321593566894,
21+
"MagneticFieldStrength": 3.0,
22+
"TotalScanTimeSec": 363,
23+
"MRAcquisitionType": "3D",
24+
"snr_total": 7.911386668025524,
25+
"icvs_gm": 0.3959101040697155,
26+
"summary_gm_mean": 211.44973754882812,
27+
"rpve_csf": 83261.9375,
28+
"tpm_overlap_wm": 0.5890556573867798,
29+
"snrd_total": 43.8475075764988,
30+
"PixelBandwidth": 200,
31+
"ScanningSequence": "GR/IR",
32+
"summary_csf_p95": 170.0,
33+
"spacing_x": 1.0,
34+
"FlipAngle": 7,
35+
"summary_gm_k": -0.6324611944326,
36+
"snr_gm": 8.794440881363833,
37+
"icvs_csf": 0.2430190456707652,
38+
"PatientPosition": "HFS",
39+
"SequenceName": "*tfl3d1_ns",
4040
"summary_bg_p05": 0.0,
41-
"qi_2": 0.0042996791690604694,
42-
"qi_1": 5.289201412128623e-06,
43-
"ImagingFrequency": 123249959,
44-
"AccelerationFactorPE": 2,
45-
"md5sum": "75cab8005361c2504ba5a7f02ecbacd7",
46-
"ScanOptions": "IR",
47-
"summary_csf_k": 2.800222210830917,
48-
"wm2max": 0.6761487964989059,
49-
"fwhm_z": 3.22984,
50-
"fwhm_y": 3.70268,
51-
"fwhm_x": 3.50783,
52-
"summary_gm_p05": 167.0,
53-
"inu_range": 0.35875076055526733,
54-
"spacing_z": 1.0,
55-
"spacing_y": 1.0,
56-
"rpve_gm": 152862.53125,
57-
"NumberOfAverages": 1,
58-
"summary_wm_p05": 255.0,
59-
"PhaseEncodingDirection": "i-",
60-
"TransmitCoilName": "Body",
61-
"modality": "T1w",
62-
"AccelNumReferenceLines": 32,
63-
"PercentPhaseFieldOfView": 100,
64-
"cnr": 11.335847854614258,
65-
"subject_id": "10159",
66-
"inu_med": 1.2151005268096924,
67-
"EchoTrainLength": 1,
68-
"version": "99.99.99",
69-
"VariableFlipAngleFlag": "N",
70-
"efc": 0.47647998100292316,
71-
"summary_wm_mean": 309.4393005371094,
72-
"summary_bg_stdv": 4.799960136413574,
73-
"summary_bg_k": 177.84711440664685,
74-
"mriqc_pred": 1,
75-
"ReceiveCoilName": "HeadMatrix",
76-
"PercentSampling": 100,
77-
"ManufacturerModelName": "TrioTim",
78-
"summary_gm_p95": 260.0,
79-
"EchoTime": 0.00331,
80-
"fwhm_avg": 3.47466,
81-
"rpve_wm": 82412.921875,
82-
"SequenceVariant": "SP/MP",
83-
"tpm_overlap_gm": 0.479917049407959,
84-
"summary_csf_mean": 126.74657440185547,
85-
"summary_bg_mean": 4.691673278808594,
86-
"summary_wm_p95": 368.0,
87-
"snr_csf": 3.691214433820612,
88-
"NumberOfPhaseEncodingSteps": 255,
89-
"summary_gm_stdv": 28.741302490234375,
90-
"SoftwareVersions": "syngo MR B15",
91-
"tpm_overlap_csf": 0.21703721582889557,
92-
"summary_wm_k": -0.15745795522916461,
41+
"qi_2": 0.0042996791690604694,
42+
"qi_1": 5.289201412128623e-06,
43+
"ImagingFrequency": 123249959,
44+
"AccelerationFactorPE": 2,
45+
"md5sum": "75cab8005361c2504ba5a7f02ecbacd7",
46+
"ScanOptions": "IR",
47+
"summary_csf_k": 2.800222210830917,
48+
"wm2max": 0.6761487964989059,
49+
"fwhm_z": 3.22984,
50+
"fwhm_y": 3.70268,
51+
"fwhm_x": 3.50783,
52+
"summary_gm_p05": 167.0,
53+
"inu_range": 0.35875076055526733,
54+
"spacing_z": 1.0,
55+
"spacing_y": 1.0,
56+
"rpve_gm": 152862.53125,
57+
"NumberOfAverages": 1,
58+
"summary_wm_p05": 255.0,
59+
"PhaseEncodingDirection": "i-",
60+
"TransmitCoilName": "Body",
61+
"modality": "T1w",
62+
"AccelNumReferenceLines": 32,
63+
"PercentPhaseFieldOfView": 100,
64+
"cnr": 11.335847854614258,
65+
"subject_id": "10159",
66+
"inu_med": 1.2151005268096924,
67+
"EchoTrainLength": 1,
68+
"version": "99.99.99",
69+
"VariableFlipAngleFlag": "N",
70+
"efc": 0.47647998100292316,
71+
"summary_wm_mean": 309.4393005371094,
72+
"summary_bg_stdv": 4.799960136413574,
73+
"summary_bg_k": 177.84711440664685,
74+
"mriqc_pred": 1,
75+
"ReceiveCoilName": "HeadMatrix",
76+
"PercentSampling": 100,
77+
"ManufacturerModelName": "TrioTim",
78+
"summary_gm_p95": 260.0,
79+
"EchoTime": 0.00331,
80+
"fwhm_avg": 3.47466,
81+
"rpve_wm": 82412.921875,
82+
"SequenceVariant": "SP/MP",
83+
"tpm_overlap_gm": 0.479917049407959,
84+
"summary_csf_mean": 126.74657440185547,
85+
"summary_bg_mean": 4.691673278808594,
86+
"summary_wm_p95": 368.0,
87+
"snr_csf": 3.691214433820612,
88+
"NumberOfPhaseEncodingSteps": 255,
89+
"summary_gm_stdv": 28.741302490234375,
90+
"SoftwareVersions": "syngo MR B15",
91+
"tpm_overlap_csf": 0.21703721582889557,
92+
"summary_wm_k": -0.15745795522916461,
9393
"software": "mriqc"
9494
}

‎test/bold/validData/sub-ds205s03_task-functionallocalizer_run-01_bold.json

+1-1
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@@ -4,7 +4,7 @@
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"bids_meta": {
55
"EchoTime": 0.035,
66
"FlipAngle": 90,
7-
"MagneticFieldStrength": 3,
7+
"MagneticFieldStrength": 3.0,
88
"Manufacturer": "Siemens",
99
"ManufacturersModelName": "Magnetom Trio",
1010
"PulseSequenceType": "single-shot echo-planar",

‎test/bold/validData/sub-ds205s03_task-view_run-01_bold.json

+1-1
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@@ -4,7 +4,7 @@
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"bids_meta": {
55
"EchoTime": 0.035,
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"FlipAngle": 90,
7-
"MagneticFieldStrength": 3,
7+
"MagneticFieldStrength": 3.0,
88
"Manufacturer": "Siemens",
99
"ManufacturersModelName": "Magnetom Trio",
1010
"PulseSequenceType": "single-shot echo-planar",

‎test/bold/validData/sub-ds205s03_task-view_run-02_bold.json

+1-1
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@@ -4,7 +4,7 @@
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"bids_meta": {
55
"EchoTime": 0.035,
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"FlipAngle": 90,
7-
"MagneticFieldStrength": 3,
7+
"MagneticFieldStrength": 3.0,
88
"Manufacturer": "Siemens",
99
"ManufacturersModelName": "Magnetom Trio",
1010
"PulseSequenceType": "single-shot echo-planar",

‎test/bold/validData/sub-ds205s07_task-functionallocalizer_run-01_bold.json

+1-1
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@@ -4,7 +4,7 @@
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"bids_meta": {
55
"EchoTime": 0.035,
66
"FlipAngle": 90,
7-
"MagneticFieldStrength": 3,
7+
"MagneticFieldStrength": 3.0,
88
"Manufacturer": "Siemens",
99
"ManufacturersModelName": "Magnetom Trio",
1010
"PulseSequenceType": "single-shot echo-planar",

‎test/bold/validData/sub-ds205s07_task-view_run-01_bold.json

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@@ -4,7 +4,7 @@
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"bids_meta": {
55
"EchoTime": 0.035,
66
"FlipAngle": 90,
7-
"MagneticFieldStrength": 3,
7+
"MagneticFieldStrength": 3.0,
88
"Manufacturer": "Siemens",
99
"ManufacturersModelName": "Magnetom Trio",
1010
"PulseSequenceType": "single-shot echo-planar",

‎test/bold/validData/sub-ds205s07_task-view_run-02_bold.json

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@@ -4,7 +4,7 @@
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"bids_meta": {
55
"EchoTime": 0.035,
66
"FlipAngle": 90,
7-
"MagneticFieldStrength": 3,
7+
"MagneticFieldStrength": 3.0,
88
"Manufacturer": "Siemens",
99
"ManufacturersModelName": "Magnetom Trio",
1010
"PulseSequenceType": "single-shot echo-planar",

‎test/bold/validData/sub-ds205s09_task-view_acq-LR_run-01_bold.json

+1-1
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@@ -4,7 +4,7 @@
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"bids_meta": {
55
"EchoTime": 0.035,
66
"FlipAngle": 90,
7-
"MagneticFieldStrength": 3,
7+
"MagneticFieldStrength": 3.0,
88
"Manufacturer": "Siemens",
99
"ManufacturersModelName": "Magnetom Trio",
1010
"PulseSequenceType": "single-shot echo-planar",

‎test/bold/validData/sub-ds205s09_task-view_acq-LR_run-02_bold.json

+1-1
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"bids_meta": {
55
"EchoTime": 0.035,
66
"FlipAngle": 90,
7-
"MagneticFieldStrength": 3,
7+
"MagneticFieldStrength": 3.0,
88
"Manufacturer": "Siemens",
99
"ManufacturersModelName": "Magnetom Trio",
1010
"PulseSequenceType": "single-shot echo-planar",

‎test/bold/validData/sub-ds205s09_task-view_acq-RL_run-01_bold.json

+1-1
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@@ -4,7 +4,7 @@
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"bids_meta": {
55
"EchoTime": 0.035,
66
"FlipAngle": 90,
7-
"MagneticFieldStrength": 3,
7+
"MagneticFieldStrength": 3.0,
88
"Manufacturer": "Siemens",
99
"ManufacturersModelName": "Magnetom Trio",
1010
"PulseSequenceType": "single-shot echo-planar",

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