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nipy/nibabel
Loading 4D MINC images

nibabel does a great job converting 3D MINC images. However, it does have an odd feature with 4D images - the MINC images tend to store time as the first dimension. In contrast, formats like NIfTI reserve ...
  • neurolabusc
  • 4
  • Opened 
    on Feb 22
  • #1412

nipy/nibabel
Add ubuntu-24.04-arm runners

We can now start testing on arm64 for Linux: https://github.com/orgs/community/discussions/148648
good first issue
infrastructure
  • effigies
  • Opened 
    on Feb 15
  • #1410

nipy/nibabel
nibabel copying mgz header incorrectly

I am currently using nibabel 5.3.2. I wrote a script to makes an edit to an mgz image. After running the script I noticed that nibabel adds what looks like rounding error to some of the mgz header. Below ...
  • MRIDude
  • 6
  • Opened 
    on Jan 7
  • #1402

nipy/nibabel
Possible feature: add GPU Direct Storage Support for Nibabel

Hi Nibabel maintainers, This is Yiheng Wang from NVIDIA, I did some research on how to use Kvikio + Nibabel to load .nii images into GPU directly, it helps accelerate the loading time especially on large ...
  • yiheng-wang-nv
  • 3
  • Opened 
    on Dec 11, 2024
  • #1401

nipy/nibabel
XA61A Cima.X CMRR MocoSeries degenerate dicoms.

Another weird case: Cima.X XA61A multi-echo fMRI data at MB=4, MoCoSeries (I know who uses that). The first dicom of the full series caused nibabel (and thus heudiconv FYI @yarikoptic ) to crash with ...
  • bpinsard
  • Opened 
    on Dec 9, 2024
  • #1400

nipy/nibabel
Getting qfac set to 1 but header file does not change.

Discussed in https://github.com/nipy/nibabel/discussions/1393 div type= discussions-op-text sup Originally posted by hbhutta November 27, 2024 /sup I have a lung CT image that I am viewing in ITK snap. ...
  • hbhutta
  • Opened 
    on Nov 27, 2024
  • #1394

nipy/nibabel
XA61A localizer crash

I got my hands on Siemens XA61A data (Cima.X), and the localizer causes heudiconv (@yarikoptic FYI) to crash in nibabel code. Traceback (most recent call last): ...
  • bpinsard
  • 10
  • Opened 
    on Nov 26, 2024
  • #1392

nipy/nibabel
Python 3.14: failing test

Hi there, Fedora has started to test packages with Python 3.14 and found that a test fails for nibabel with Python 3.14.0a2. __________________ TestDeprecatorMaker.test_deprecator_maker ___________________ ...
  • sanjayankur31
  • Opened 
    on Nov 26, 2024
  • #1390

nipy/nibabel
nicom MultiframeWrapper fails to return image_shape attribute with multi-volume mri data

Does the nibabel.nicom dicom wrapper support multi-frame dicoms with multiple volumes? I have a dicom with frame index ordering: Temporal Position Index , Stack ID , In Stack Position Number . Loading ...
  • AlanKuurstra
  • 2
  • Opened 
    on Nov 21, 2024
  • #1388

nipy/nibabel
2 failures and 1 error in tests

========================================================================================== ERRORS =========================================================================================== _____________________________________________________________________ ...
  • yurivict
  • 1
  • Opened 
    on Nov 17, 2024
  • #1386
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