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fix: sub cost in aligner
Tests #506: Commit 0f3736e pushed by nishaq503
November 16, 2024 20:03 15m 10s feat/msa
November 16, 2024 20:03 15m 10s
fix: affine gap penalties must be scaled by highest substitution cost.
Tests #505: Commit dbc4243 pushed by nishaq503
November 16, 2024 19:06 15m 12s feat/msa
November 16, 2024 19:06 15m 12s
fix: some issues in cost matrix
Tests #504: Commit 32a3e17 pushed by nishaq503
November 15, 2024 17:23 15m 1s feat/msa
November 15, 2024 17:23 15m 1s
fix: blosum matrix
Tests #503: Commit 1cee26e pushed by nishaq503
November 14, 2024 22:49 15m 11s feat/msa
November 14, 2024 22:49 15m 11s
chore: more cleanup
Tests #502: Commit d1d28a5 pushed by nishaq503
November 14, 2024 18:50 15m 17s feat/msa
November 14, 2024 18:50 15m 17s
chore: cleanup in row major
Tests #501: Commit 70ec4bd pushed by nishaq503
November 14, 2024 18:42 15m 19s feat/msa
November 14, 2024 18:42 15m 19s
chore: cleanup in aligner
Tests #500: Commit 9ede0ff pushed by nishaq503
November 14, 2024 18:29 15m 5s feat/msa
November 14, 2024 18:29 15m 5s
chore: cleanup in cost matrix
Tests #499: Commit e87d501 pushed by nishaq503
November 14, 2024 18:18 14m 56s feat/msa
November 14, 2024 18:18 14m 56s
chore: propagating name change
Tests #498: Commit cb073d5 pushed by nishaq503
November 14, 2024 18:11 15m 2s feat/msa
November 14, 2024 18:11 15m 2s
chore: renamed Builder in msa
Tests #497: Commit ca7d02d pushed by nishaq503
November 14, 2024 18:05 15m 14s feat/msa
November 14, 2024 18:05 15m 14s
chore: cleanup in ball.rs
Tests #496: Commit 235271a pushed by nishaq503
November 14, 2024 18:01 14m 55s feat/msa
November 14, 2024 18:01 14m 55s
revert: rolled back addition of data param in adapter traits
Tests #495: Commit b5c4127 pushed by nishaq503
November 14, 2024 17:54 15m 20s feat/msa
November 14, 2024 17:54 15m 20s
feat: I am really good at parallelism
Tests #494: Commit 9aab85b pushed by nishaq503
November 12, 2024 22:17 15m 2s feat/msa
November 12, 2024 22:17 15m 2s
feat: added abg and max p-distance measures
Tests #493: Commit 5e9c72d pushed by nishaq503
November 12, 2024 22:08 15m 3s feat/msa
November 12, 2024 22:08 15m 3s
feat: columnar metrics are not much faster to compute
Tests #492: Commit b96513a pushed by nishaq503
November 12, 2024 18:20 15m 17s feat/msa
November 12, 2024 18:20 15m 17s
fix: extended iupac cost matrix
Tests #491: Commit c514799 pushed by nishaq503
November 11, 2024 20:14 15m 10s feat/msa
November 11, 2024 20:14 15m 10s
chore: imports in a test
Tests #490: Commit 32826ff pushed by nishaq503
November 10, 2024 21:09 15m 9s feat/msa
November 10, 2024 21:09 15m 9s
build: made stringzilla an optional dep for msa feature in abd-clam
Tests #489: Commit b258020 pushed by nishaq503
November 10, 2024 20:59 15m 14s feat/msa
November 10, 2024 20:59 15m 14s
feat: added lev-vs-ham distance distortion metric
Tests #488: Commit 330e581 pushed by nishaq503
November 10, 2024 19:10 15m 37s feat/msa
November 10, 2024 19:10 15m 37s
chore: some more cleanup
Tests #487: Commit 17d0f61 pushed by nishaq503
November 10, 2024 16:49 14m 54s feat/msa
November 10, 2024 16:49 14m 54s
build: bumped version of abd-clam 0.31.0 -> 0.32.0
Tests #486: Commit 58e136a pushed by nishaq503
November 9, 2024 20:00 15m 17s feat/msa
November 9, 2024 20:00 15m 17s
fix: optionally removing gaps when first reading fasta files
Tests #485: Commit 09d671c pushed by nishaq503
November 9, 2024 19:17 15m 22s feat/msa
November 9, 2024 19:17 15m 22s
fix: removing dots and gaps
Tests #484: Commit f02072f pushed by nishaq503
November 9, 2024 19:03 15m 5s feat/msa
November 9, 2024 19:03 15m 5s
feat: added method to recover an unaligned dataset
Tests #483: Commit cc8fa32 pushed by nishaq503
November 9, 2024 18:57 15m 8s feat/msa
November 9, 2024 18:57 15m 8s
chore: lots of cleanup
Tests #482: Commit 25af9a0 pushed by nishaq503
November 9, 2024 18:02 15m 18s feat/msa
November 9, 2024 18:02 15m 18s