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Hosted MRI-processing scripts for the paper "Discrete pre-processing step effects in registration-based pipelines, a preliminary volumetric study on T1-weighted images".

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nmuncy/Preproc_Effects

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Nathan Muncy
Oct 14, 2017
8cc5995 · Oct 14, 2017

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Preproc_Effects

Hosted scripts for building templates and template priors, pre-processing data, extracting ROI volumes, and running a tensor-based morphometric analysis.

Basic Notes:

  1. Scripts that start with "MT" are used for creating a template.
  2. Scripts that start with "PP" are used in the pre-processing pipeline.
  3. Scripts are numbered (e.g. *_1.sh, *_2.sh) to indicate their respective step in the pipeline.
  4. Sbatch scripts are written for a slurm environment, and are wrapped with submit_sbatch scripts.

Citation: Muncy NM, Hedges-Muncy AM, Kirwan CB (2017) Discrete pre-processing step effects in registration-based pipelines, a preliminary volumetric study on T1-weighted images. PLOS ONE 12(10): e0186071. https://doi.org/10.1371/journal.pone.0186071

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Hosted MRI-processing scripts for the paper "Discrete pre-processing step effects in registration-based pipelines, a preliminary volumetric study on T1-weighted images".

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