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Screencast Tutorials

esimonds edited this page Nov 22, 2011 · 3 revisions

WARNING - These screencasts show an old version of the CytoSPADE plugin and an old version of the SPADE code. New screencasts showing the current user interface will be posted at this site when they are completed.

Installing R and Cytoscape prerequisites

Installing the SPADE package for R

Installing the SPADE Cytoscape plugin

Starting a new analysis in Cytoscape

Analyzing SPADE output with Cytoscape

Modifying tree layout and batch producing PDFs

Adjusting node size and exporting single PDFs

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