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You are right.
The problem is that Github for some reason doesn't provide a possibility to tag the gist though web interface, like it does for regular repos. It seems to work though if I clone the gist locally, tag a commit and push it back on Github, then I am able to update with npm install. Very inconvenient, but I think that this is not npm's problem, so i will close it.
Official documentation implies that one can use semver syntax with gists
npm install gist:[<githubname>/]<gistID>[#<commit-ish>|#semver:<semver>]:
It doesn't seem to be true.
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