nrnziprun.dat

2VN 139654

5chan 3673
verify_graph_()
objref save_window_[1]
graphList[0].remove_all
graphList[1].remove_all
objref VoltageClamp
load_file("fig3a.ses")
run()
verify_graph_()

ACh_ModelDB 149739
demo_run()
verify_graph_()

AkemannEtAl2009 123453
run_model(prot)
verify_graph_()

AkemannKnopfelPurkinje_cell_model 80769
restart("shortRun")
verify_graph_()

Alle_et_al_2009 135838

AnwarEtAl2010 138382

Arsiero_et_al2007 83590
/* beginscript
sed 's/mustart  = -0.400/mustart  = 0.800/
 s/sigmastart  = 0.064/sigmastart  = 0.128/
' mylibs/TFparams.hoc > temp.tmp
mv temp.tmp  mylibs/TFparams.hoc
endscript */

AshhadNarayanan2013 150551

BGnet 127388

BahlEtAl2012 146026

BahmerLangner2007 87454
chdir("NEURON_Chopper_Network_Simulation")
xopen("mosinit.hoc")
runhere()
verify_graph_()

BalbiEtAl2013 151443

Basketcell 114047
tstop=1e1
xopen("fig6.hoc")
verify_graph_()

BerzThetaGamm2013 144589

BianchiEtAl2013 151126

BiddellJohnson2013 150556

Branch_Point_Tapering 146509

Branco_2010 140828

CA1_Aged 119266
run()
verify_graph_()

CA1_Gomez_2011 144450

CA1_abeta 87284

CA1_multi 20212
chdir("mechanism")
xopen("mosinit.hoc")
unix_spike_atten_hof()
verify_graph_()

CA3Atrophy 147867

CNModel_May2013 150024

CN_Bushy_Stellate 37857
run()
verify_graph_()

CN_Pyr 37856
runiv()
verify_graph_()

Ca1_Bianchi 143719

CaT 19920
run()
verify_graph_()

CanavierLandry2006 84612
restart_("fig4b1")
tstop=1000
run()
verify_graph_()

CarvalhoBuonomano 125689

CasaleEtAl2011 143635

Channels_NEW 18500
duration = 2 
restart("demo_ampa")
verify_graph_()

Chirp 147539

Chloride_Model 148253

CoHCNS2000 19747
run()
verify_graph_()

CruzEtAlS_cellModel 117459
run()
verify_graph_()

D2modulation 98005
run()
verify_graph_()

DAcomparison 167772
//do not run Tried "initDialog.unmap(1)" - didnt work.  Need to change archive

DAmodel 141272
//do not run Problem is that Vbox.dialog() steals the focus (complex to fix)

DG_BC 140789

DLGN_NEW 3343
restart("Fspin")
init()
run()
verify_graph_()

DRG_Devor 140038

DendroDendriticInhibition 116094
load_file("mosinit.hoc")
run_experiment("fig2ace")
tstop=40
init()
run()
verify_graph_()
run_experiment("fig1")
tstop=1
init()
run_fig1bde()
verify_graph_()

DiFrancescoNoble1985 144520

DynBasIrregSpNMDA 82784
load_file("runShort.hoc")
verify_graph_()

ElectricallycoupledRetziusneurons 120910
run()
verify_graph_()

EurJNeurosci2000 19491
verify_graph_()

FFI 124291
stim.amp = 0.1
runa()
verify_graph_()

FRB 125857

FRBGamma 144579

FV 138082

FerranteEtAl2008 119283
use_mcell_ran4(1)
runi()
verify_graph_()

Figure5 140471

Fineberg_et_al_2012 145672

FleidervishEtAl2010 136715

FoustEtAl2011 143442

GPSingleCompartment 122329
{ load_file("withSKsoma.hoc") init() }
tstop = 500
run()
verify_graph_()

GPeNeuronKitano 143100

Ga_demo 97756
xopen("show_start.hoc")
verify_graph_()

GeneralizedCarnevaleHinesScheme 115357
makeplusplus()
verify_graph_()

Golgi_cell 112685
run()
verify_graph_()

Golgi_cell_NaKATPAse 127021

Gow_Devaux_2009 122442
load_file("DCM_0.6um_axon.ses")
newPlotV()
run()
verify_graph_()

GrC 116835
tstop=10
run()
verify_graph_()

GranuleCell 46839
verify_graph_()

HAGPA 113997
restart("demo_HPGA_non-saturating.hoc")
tstop=30000
run()
verify_graph_()

HB 2798
run_c()
verify_graph_()

HBplusIh 141063
//do not run Problem is that Vbox.dialog() steals the focus (complex to fix)

HCN2k 19176
experiment1()
verify_graph_()

HFO 114735
run()
verify_graph_()

HHcn 127992

HallermannEtAl2012 144526

HayEtAl2013 149100

Hines2011 137845

HinesCarnevaleJNM2007 96444
chdir("ring")
load_file("ringpar.hoc")
verify_graph_()

Hipp_paper_code 123815
tstop=5
newPlotV()
run()
verify_graph_()

Hossain 54903
{load_file("Fig6-B.ses")}
run()
verify_graph_()

HuEtAl2009 123897
xopen("experiment/Pyramidal_Main.hoc")
freePlay()
tstop=20
run()
verify_graph_()

IcaT 3533
run()
verify_graph_()

Ih_current 144541

JohnsonMcIntyre2008 114685
short_run()
verify_graph_()

JonesEtAl2009 136803

KampaStuart2006 108458
AP3_toq = 1
set_stim()
run()
verify_graph_()

Katona_et_al 136176

KerrEtAl2013 147366
//do not run

KimEtAl2013 150288

KoendgenEtAl2008 118631
use_mcell_ran4(1)
graph_and_run()
verify_graph_()

Kopp-Scheinpflug2011 139657

Kourennyi-etal2004 64216
verify_graph_()

KubotaEtAl2011 140299

KuznetsovaEtAl2010 127507

L5bPCmodelsEH 139653

LFP 136310

LGMD 144007

LavzinEtAl2012 146565

LetzkusEtAl2006 108459
run()
verify_graph_()

LindsayEtAl2005 129149

Liu-Kourennyi_2004 64228
restart("0222AP_BR.ses")
run()
verify_graph_()

LuthmanEtAl2011 144523
objref test_graph_
test_graph_ = new Graph()
graphList[0].append(test_graph_)
test_graph_.addexpr("v(.5)", 1, 1, 0.8, 0.9, 2)
tstop=10
init()
run()
verify_graph_()

MRGaxon 3810
stdinit()
continuerun(2)
cvode_active(1)
continuerun(150)
verify_graph_()

MSN2009 121060
Exec()
verify_graph_()

MSO_Zhouetal_2005 53869
//takes a long time

MT-GC 97263
run()
verify_graph_()

MahonEtAl2000 150621

MasurkarChen2011 140462

McCormickEtAl2007YuEtAl2008 135839

MiglioreMcTavish2013 149415

MoradiEtAl2012 145836
ParmFitnessGui[0].run()
verify_graph_()

MultiChirp 147578

Munro_Kopell_corticalcontrol 136309

MyFirstNEURON 3808
xstatedum[2]=1
new_experiment(3)
run()
verify_graph_()

NCnote 64259
use_mcell_ran4(1)
run()
verify_graph_()

NEURON-2008b 113446
tstop=500
tstop_changed()
run()
verify_graph_()

NMDA_Mg 50207
run()
verify_graph_()

NN_kole 114394
run()
verify_graph_()

NQS_with_example 97874
//moddir modeldb
verify_graph_()

NTW_NEW 3670
restart("Fig5A")
run()
verify_graph_()

Nakano_FICN_model 151458

NarayananJohnston2010 147538

NegroniLascano 126467

Neural_Computation 18197
restart("demo_glutamate_neuralcomputation")
verify_graph_()

NeuroCubeWeblink 147487

NeuroMorph 138273

OLMmodel 28316
verify_graph_()

OverstreetEtAl2013 147460

PFCcell 144089

PalmerStuart2009 120798

ParekhAscoli2013 148644

Poleg-PolskyDiamond2011 139150

PospischilEtAl2008 123623
run()
verify_graph_()

PowersEtAl2012 143671

PublioEtAl2009 124063
/*beginscript
sed 's/tstop = 6500/tstop = 100/' session.ses > temp.tmp
mv temp.tmp session.ses
endscript*/
tstop=10
run()
verify_graph_()

PurkReductionOnLine 149000

Pyramidal_STDP_Gomez_Delgado_2010 144482

R859C 87585
verify_graph_()

ROD 95870
run()
verify_graph_()

ReConv 139883

Recruitnet 135903

Ribbon 50997
restart("makefig7")
verify_graph_()

RichyandStarfish 102288
fig9A1()
verify_graph_()

RomaniEtAl2013 147757

RoyeckEtAl2008 115356
short_test()
verify_graph_()

SeqLearn 147461
//do not run Minimum time would be 1/2 hr default time is about 8.3 hours

SFS-IPS-WM-network 98017
//do not run

SNRCA1 19746
run()
verify_graph_()

SPUD_NRN_MySQL_20091026 97868
//do not run

SRandCRnet 135902

SS-cortex 113732
use_mcell_ran4(1)
suprathresh()
tstop=50
tstop_changed()
run()
verify_graph_()

SSC_model 114637

SYN_NEW 18198
restart("release")
run()
verify_graph_()

Sbpap_code 125385

Schizophr 138205

ShepherdBrayton1979 144385

ShortTermPlasticityMFGRC_Nieus2006 128446

ShuEtAl20062007 135787

Skolnik_python_WinogradEtAl2008 144376

SpaceClampDemo 110560
xopen("calcium.hoc")
fig1b()
objref gg, rvp_
gg = new Graph()
gg.size(-250,250,-80, 80)
rvp_ = new RangeVarPlot("v")
a_dend_3_0_0_0_1_1_1 rvp_.begin(1)
a_dend_1_0_1_0_1_1_1 rvp_.end(1)
rvp_.origin(9.96606)
gg.addobject(rvp_, 2, 1, 0.8, 0.9)
verify_graph_()

SpineCaModel 116769
verify_graph_()

StiefelSejnowskiCode 93398
restart("shortRun")
verify_graph_()

Stochastic 64195
//do not run problem due to randomness and takes too long due to failure to set steps_per_ms consistent with dt

ThomasPetrou2013 149174

TimeScales-master 150284
//do not run Mattione Le Novere missing _run_me.hoc in parallel model

Traub2003 20756
pyr3_ = new pyr3( 21 ) 
setFig2()
tstop=100
run()
verify_graph_()

Uebachs-et-al_2010 125152

V1_PFC_ModelDB 144553

VNO 64212

Vierling-ClaassenEtAl2010 141273

VladimirovTuTraub2012 144401

VladimirovTuTraub2013 150446

WC 76879
tstop=20
run1(1)
verify_graph_()

WDR-Model 128559

Welday_et_al 129067

Welie-Wadman-JPhysiol-subiculum 82364
reg_20()
verify_graph_()

Wimmer-et-al2009 123927

XiEtal2013 150538

YuEtAl2012 144570

YuEtAlPNAS2007 135898

ZhouColburn2010 143114

a2dmodeldb 150245
tstop=100
init()
run()
verify_graph_()

acker_antic 117207
restart("AckerAnticBasalBackprop")
RunAll()
verify_graph_()

alzheimer 144976

amirdevor03 51022
verify_graph_()

anderson 3812
verify_graph_()

anetdemo 144586

anyas2005 53435
// disregard. mod files in subdirectory

aradi1999 116740
{init() run()}
verify_graph_()

arm1d 144538

aubieEtAl2012 144511

b 62285
verify_graph_()

b04feb12 35358
verify_graph_()

b07dec17 105507
/* beginscript
sed 's/batch_flag=0/batch_flag=1/
s/tstop = 1e3/tstop = 20/' batch_.hoc > temp.tmp
mv temp.tmp batch_.hoc
endscript */
load_file("batch_.hoc")
verify_graph_()

b07dec27_20091025 106891
tstop=10
runeg()
verify_graph_()

b08dec23 116830
/*beginscript
sed 's/tstop = 100/tstop = 20/' init.hoc > temp.tmp
mv temp.tmp init.hoc
endscript*/
// takes too long and no gout data
//load_file("init.hoc")
//verify_graph_()

b09jan08 116838
/* beginscript
sed 's/^showdemo=1/showdemo=0/' mosinit.hoc > temp.tmp
mv temp.tmp mosinit.hoc
endscript */
tstop=10
run()
verify_graph_()

b09jan13 116862
verify_graph_()

b1 62266
run()
verify_graph_()

b11aug17 140881
//do not run Lytton model takes too long to run and complex to edit

ba 62284
run()
verify_graph_()

baccus98 3807
fig6()
verify_graph_()

badoual_stdp 116096
tstop=1
init()
run()
verify_graph_()

baker05 85112
verify_graph_()

bbmit 2733
verify_graph_()

beelerReuter 97863
verify_graph_()

bfb-etal-2012 151404

bfstdp 64261
//do not run takes too long

bogaard2009 121259
load_file("homrun.hoc")
verify_graph_()

boosting 7386
runc()
verify_graph_()

bpap 144490

brill77 9848
verify_graph_()

bulbNet 2730
//launch but do not run

ca1 2796
run()
verify_graph_()

ca3-summ 118098
newPlotV()
run()
Graph[0].exec_menu("View = plot")
verify_graph_()

ca3-synresp 137259

ca3_2002 20007
verify_graph_()

ca3_db 3263
runb()
verify_graph_()

ca3b 101629
tstop=250
run()
verify_graph_()

ca3ihdemo 151282

ca_rgc 3457
run()
verify_graph_()

ca_t_lva 53893
restart("fig3")
verify_graph_()

canavier1999 6763
run()
verify_graph_()

cardiac1998 3800
verify_graph_()

cdlab 3434
init()
gr.showAllTimeGraphs=1
tstop=1
run()
verify_graph_()

chain_1d 94321
tstop=10
init()
run()
verify_graph_()

chen2002 3793
restart("fig5a")
verify_graph_()

cortex 3817
restart("demo_PY_RS")
run()
verify_graph_()

crane2001 3785
verify_graph_()

ctng-2013-10-05 146950

ctxnet 52034
run_short()
verify_graph_()

dLGN_modelDB 140249

damodel 83547
run()
verify_graph_()

db 3289
run()
verify_graph_()

demo 22203
//disregard cannot be run in batch mode

dendgeom 18738
verify_graph_()

dendre 17663
restart("re1_cc")
run()
verify_graph_()

dendritic_complexity 147514

dendtc 279
restart("tc1_cc")
run()
verify_graph_()

dentate_gyrus 124513

dentategyrusnet2005 51781
load_file("testnet.hoc")
verify_graph_()

destexhe_benchmarks 83319
//disregard NEURON in subdirectory

develop 126814

dgbc 3801
run()
verify_graph_()

djurisic2008 136026

dm1_pn_model 118662
proc run(){}
restart_("figure_4a_cell1")
newPlotV()
proc run() { stdinit() continuerun(tstop) }
run()
verify_graph_()

dodge73 3805
verify_graph_()

eaps 84589
//ignore sim in subdirectory
// have not been able to run yet
////moddir mod
// load_file("hoc/src/refs.hoc")
// load_file("cells/d151.hoc")
// load_file("hoc/src/file_util.hoc")
// load_file("hoc/src/main.hoc")

ephaptic 3676
xopen("fig2.hoc")
verify_graph_()

fdemo 138379
mytstop=0.1e3
tstop=mytstop
finish_run()
verify_graph_()

fh 3507
verify_graph_()

fietkiewicz2011 139418

fink2000 125745

fluct 8115
use_mcell_ran4(1)
run()
verify_graph_()

fs_internrn_neuron 113435
init()
run()
verify_graph_()

gap-modeldb 43039
rung()
verify_graph_()

gaspiriniEtAl2004 44050
runm()
verify_graph_()

gc-1.1 95960
fig6a()
verify_graph_()

geigerEtAl1997 19022
run()
verify_graph_()

genet_PC 147218

geomindu 19214
Main(5)
run()
verify_graph_()

giuglianoEtAl2007 112086
use_mcell_ran4(1)
restart("metal()")
run()
verify_graph_()

gludiff 3658
glubes2D()
run()
verify_graph_()

gp 105385
loadfig9()
tstop=100
run()
verify_graph_()

granule 19591
restart("fig1a")
verify_graph_()
restart("fig2a1")
verify_graph_()
restart("fig2a2")
verify_graph_()
restart("fig2a3")
verify_graph_()
restart("fig2b1")
verify_graph_()
restart("fig2b2")
verify_graph_()
restart("fig2b3")
verify_graph_()

grid 150239

h_cno 3332
run()
verify_graph_()

h_pg 3665
run()
verify_graph_()

h_tc 3684
run()
verify_graph_()

herzogEtAl01 86537
restart_("fig4")
verify_graph_()

hh 5426
verify_graph_()
{restart() load_file("hhk.ses") run() verify_graph_()}
{restart() load_file("hhna.ses") run() verify_graph_()}
{restart() load_file("hhkfit.ses") run() verify_graph_()}
{restart() load_file("hhnafit.ses") run() verify_graph_()}
{restart() load_file("hhna.ses") run() verify_graph_()}

hines2001 53451
restart("fig7")
verify_graph_()

hines2004 53437
run()
verify_graph_()

hoppy 144549

hpcdemo 139421

ihmodel 8284
run()
verify_graph_()

inhibnet 21329
//do not run random seed different every time

izh 39948
p(5)
verify_graph_()

joyner80 9853
verify_graph_()

k_interneurons 20015
run()
verify_graph_()

ka_dg 3344
run()
verify_graph_()

ka_kdr_mt 3648
run()
verify_graph_()

ka_kdr_neoLI 3660
run()
verify_graph_()

ka_rgc 3488
run()
verify_graph_()

kca 3509
verify_graph_()

kdr_rgc 3491
run()
verify_graph_()

kkt98 20014
Main(1)
verify_graph_()

km 112546
runiv()
verify_graph_()

kootsey83 120692
load("fig7.hoc")
verify_graph_()

korngreenEtAl2005 83523
//nothing to do

korogod 19366
Main(2)
verify_graph_()

kv31model 3454
run(NetStim[0].interval=10)
verify_graph_()

kv72-R213QW-mutations 148094

kx_photo 3802
run()
verify_graph_()

lamina1 53569
run()
verify_graph_()

lamotrigine 9769
use_mcell_ran4(1)
rund()
verify_graph_()

larkumEtAl2009_2 124043
tstop=80
run()
verify_graph_()

leeEtAl2003 125378

lgnsigint 29942
verify_graph_()

lindgren89 10360
verify_graph_()

liuEtAl1998 93321
fig3topleft()
verify_graph_()

locstepperf 33975
ringperf()
run()
verify_graph_()

lsimp2 51196
run()
verify_graph_()

lytton97 9889
verify_graph_()

lytton97b 12631
verify_graph_()

lytton98 7399
verify_graph_()

lytton99 7400
verify_graph_()

magee2000 7509
verify_graph_()

magical7 87535
runm()
verify_graph_()

mcn1 3511
verify_graph_()

mctavish_syncbylocation 144054

migliore2010 127995

mit4 2487
run()
verify_graph_()

mitral 64296
fig7A()
verify_graph_()

mitral_1999 3342
verify_graph_()

modeldb 144392

modeldb-etoh 112359
tstop=2000
tstop_changed()
control()
verify_graph_()

modeldb_package 144566

moore78 9851
verify_graph_()

moore83 9852
verify_graph_()

motoneuron 3493
run()
verify_graph_()

multisplit 97985
verify_graph_()

murphy01 7988
verify_graph_()

mutant 118986
run()
verify_graph_()

mvns 53876
restart("fig2c")
verify_graph_()

na2006 62673
verify_graph_()

na8st 128079

na_rgc 3483
run()
verify_graph_()

nacb_msp 112834
verify_graph_()

nainact 18742
restart("fig6A")
verify_graph_()

nc-mri 106551
use_mcell_ran4(1)
tstop=10
run()
verify_graph_()

ncdemo 136095

netmod 64229
// mod files in subdirectory

network 139656
//do not run

neuroprosthesis 141505
//do not run Specialized installation environment

nevian 124394

nfrost 93325
run()
verify_graph_()

ngetting 93326
run()
verify_graph_()

nrnpython 116491
nrnpython("import ch6_model")
verify_graph_()

nrntraub 82894
run()
verify_graph_()

obliques 55035
runm()
verify_graph_()

oconnoretal2012 146030

olm-int 87546
cvode_active(1)
tstop=200
run()
verify_graph_()

oltedal 84655
run()
verify_graph_()

package 144502

pashut2011 138321

patdemo 2488
fig_1()
fig1a()
run()
verify_graph_()

pcell 82849
load_file("fig2A.hoc")
verify_graph_()

plast 114665
disp()
verify_graph_()

prknj 17664
verify_graph_()

purkinje 48332
verify_graph_()

purkinje_ppr 126637

rall1964 116981
fig5()
verify_graph_()

rebound 126776

reduction1.0 146376

rejuvenation 97860
run()
verify_graph_()

ring 33728
verify_graph_()

saghatelyan 50210
runshift()
verify_graph_()

sc-pp 19696
runh()
verify_graph_()

sheasbyfohlmeister1999 18501
verify_graph_()

shrager91 3798
{inter_fhdens(0.4e-3) demyl1(1,3) run()}
verify_graph_()

singleDendrite 143604

slowinact 2937
run3()
verify_graph_()

spikeinit 8210
dend_inj()
verify_graph_()

spinebranches 18502
restart("ltp_two")
verify_graph_()

spinycell 39949
verify_graph_()

splitcell 97917
traub_launch()
verify_graph_()

spru1998 3677
verify_graph_()

stdpscalingpaper 147141

sth-model 74298
//takes too long
/* beginscript
sed 's,tstop *=,tstop = 100//,
/whichAP/,$d
' sample.hoc > temp.tmp
mv temp.tmp sample.hoc
endscript*/
load_file("sample.hoc")
verify_graph_()

stnAxonDbsModel 121253
short_run()
verify_graph_()

stochastichh 50391
verify_graph_()

stockbridge1982 21984
verify_graph_()

stockbridge84 9888
verify_graph_()

synchro-ca1 32992
/* beginscript
echo 'use_mcell_ran4(1)' > temp
cat mosinit.hoc >> temp
mv temp  mosinit.hoc
endscript */
verify_graph_()

synmap 3682
/* beginscript
echo 'use_mcell_ran4(1)' > temp
cat mosinit.hoc >> temp
mv temp  mosinit.hoc
endscript */
verify_graph_()

thal_aug_resp 37819
verify_graph_()

theta 116983
tstop=10
run()
verify_graph_()

timing 3167
use_mcell_ran4(1)
run()
verify_graph_()

tsodyks 3815
run_fig1a()
init()
run()
verify_graph_()

v8sources 114355
//moddir mechanisms
forall delete_section()
chdir("main")
load_file("main.hoc")
cell_cfg(1)
tstop = 10
tstop_changed()
run()
verify_graph_()

vanElburg_vanOoyen_2010 114359

varela 3264
use_mcell_ran4(1)
run_fig3a()
init()
run()
verify_graph_()

vs4_modelDB 116956
run()
verify_graph_()

wang1996 26997
fig1a()
verify_graph_()

weaver_SimAnn_ObjFcn 87473
//disregard

weblink 83344
// disregard

westerfield78 9849
verify_graph_()

window 7659
runp()
verify_graph_()

withdrawal 126640

xiaoshenli 71312
NregNsyn(4)
verify_graph_()

zippedModels 53965
// disregard