CPU usage is still double in 2.11.1

[ChenfuShi]

Hi Nicholas,
I have received a complaint from our sysadmins because my jobs were using double the number of CPUs for bowtie. Looking at the bowtie_wrap.sh scripts I see that you set bwt_cpu=$(( $N_CPU / 2 )) but then that variable is not used and instead still uses
cmd="${BOWTIE2_PATH}/bowtie2 ${BOWTIE2_GLOBAL_OPTIONS} --rg-id BMG --rg SM:${prefix} -p ${N_CPU} -x ${BOWTIE2_IDX} -U ${infile} 2>> ${ldir}/${prefix}_bowtie2.log"

This seems to result in calling bowtie with the full number of CPUs

Can you confirm this?
Thanks!

[nservant]

Hi,
Which version are you using please ?

[nservant]

sorry just see it in the message title. I will look at it, and fix it as soon as possible
Sorry for that !
N

[nservant]

Thanks. Fixed in devel