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NTR: linked-read sequencing assay #1559

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mgiglio99 opened this issue Jun 17, 2022 · 4 comments · Fixed by #1841
Closed

NTR: linked-read sequencing assay #1559

mgiglio99 opened this issue Jun 17, 2022 · 4 comments · Fixed by #1841
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coord:CFDE terms created for Common Fund Data Ecosystem dev:new term domain:process - assay

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@mgiglio99
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Hi,
We'd like to request a new term as part of the CFDE project for Kids First DCC.

new term label: linked-read sequencing assay
parent: DNA sequencing assay, OBI:0000626
definition: A DNA sequencing assay that uses microfluidics to partition and barcode high molecular weight DNA such that short reads derived from fragments of the large piece of DNA can be assembled within the context of the high molecular weight piece of DNA they are derived from, facilitating the use of short read data to sequence and assemble large genomes.

@mgiglio99
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Discussed on June 27th call.
Future changes will add axiom to 'DNA sequencing assay' that this has target entity is 'primary structure of DNA molecule'
Confirmed that this is true for this new term.
https://ontobee.org/ontology/OBI?iri=http://purl.obolibrary.org/obo/OBI_0000811
Otherwise ok.

@mgiglio99 mgiglio99 added dev:new term domain:process - assay coord:CFDE terms created for Common Fund Data Ecosystem labels Apr 17, 2023
@mgiglio99
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Reserved OBI id for this term is OBI:0003412

@sebastianduesing sebastianduesing self-assigned this May 13, 2024
@mgiglio99
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DNA sequencing assay axioms are fine - that part is done.
Sebastian will help Michelle do the pull request for the new term.

@mgiglio99
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Hi Sebastian, thanks for including this in your pull request.
: )

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